Fish Single-cell RNA Database

GENE ID: ENSDARG00000029995

Symbol	Location	Gene type	Genome version	Species
tnni2b.2	7: 39385540 ~ 39394430 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000029995 (tnni2b.2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045560	mybpc1	4: 17726841 ~ 17793152 (-)
ENSDARG00000045822	tnnt2e	4: 7508316 ~ 7544687 (+)
ENSDARG00000068457	tnnt3b	7: 39444843 ~ 39460363 (+)
ENSDARG00000001431	actn3b	7: 6969909 ~ 7133475 (+)
ENSDARG00000029995	tnni2b.2	7: 39385540 ~ 39394430 (+)
ENSDARG00000012944	myhz2	5: 32206378 ~ 32217579 (+)
ENSDARG00000035438	myhc4	5: 32221755 ~ 32233862 (+)
ENSDARG00000095930	myha	5: 32246872 ~ 32257316 (+)
ENSDARG00000067995	myhz1.2	5: 32281815 ~ 32293002 (-)
ENSDARG00000067990	myhz1.1	5: 32298624 ~ 32309129 (-)
ENSDARG00000068910	nos1	5: 12100126 ~ 12272689 (-)
ENSDARG00000054010	scaf1	3: 32477782 ~ 32490621 (+)
ENSDARG00000100349	prkacaa	3: 49459828 ~ 49504023 (-)
ENSDARG00000001993	myhb	6: 40745437 ~ 40756138 (-)
ENSDARG00000100694	tnnt2b	6: 54761141 ~ 54796072 (-)
ENSDARG00000079564	myh7	2: 24252987 ~ 24270062 (-)
ENSDARG00000040254	hormad1	16: 29551023 ~ 29557338 (-)
ENSDARG00000090637	myh6	20: 53577502 ~ 53583436 (+)
ENSDARG00000079823	mrps36	8: 17163494 ~ 17167830 (-)
ENSDARG00000002571	tmod2	18: 39327010 ~ 39382869 (+)
ENSDARG00000076357	CABZ01102039.1	12: 204095 ~ 212843 (-)
ENSDARG00000011400	tnnc1a	23: 4890693 ~ 4895876 (+)
ENSDARG00000006174	lrrc23	23: 20127883 ~ 20133994 (-)
ENSDARG00000020610	tnnt2a	23: 5653224 ~ 5685172 (-)
ENSDARG00000036903	irak1bp1	23: 31245395 ~ 31248952 (+)
ENSDARG00000095002	NA	23: 20408227 ~ 20420243 (+)
ENSDARG00000024026	sdf2	21: 26021496 ~ 26028205 (-)
ENSDARG00000056633	fgf13b	10: 26716362 ~ 26744166 (-)
ENSDARG00000043196	rnasel2	22: 6293563 ~ 6294749 (+)
ENSDARG00000006981	ccdc113	25: 13662606 ~ 13668229 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	Muscle cells (cluster: 17)	potential marker	NA
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells	Muscle cells (cluster: 11)	potential marker	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 12)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000029995

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences