Fish Single-cell RNA Database

GENE ID: ENSDARG00000056833

Symbol	Location	Gene type	Genome version	Species
svopa	5: 20147830 ~ 20165688 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000056833 (svopa), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000093253	NA	5: 25536616 ~ 25576462 (-)
ENSDARG00000104278	slc2a8	5: 65970235 ~ 65986604 (+)
ENSDARG00000056833	svopa	5: 20147830 ~ 20165688 (+)
ENSDARG00000035459	spns3	5: 30956981 ~ 30984271 (-)
ENSDARG00000086786	mfsd10	5: 66220601 ~ 66236676 (+)
ENSDARG00000002564	syngr1a	3: 21251627 ~ 21280373 (-)
ENSDARG00000011925	spns1	3: 15455319 ~ 15475080 (-)
ENSDARG00000014761	mfsd6l	3: 25849560 ~ 25852579 (+)
ENSDARG00000059690	slc29a4	3: 40315410 ~ 40349733 (+)
ENSDARG00000102828	mfsd11	3: 60607241 ~ 60624039 (+)
ENSDARG00000076959	si:ch211-38m6.6	2: 7847480 ~ 7874384 (+)
ENSDARG00000013117	hiat1a	2: 37656078 ~ 37684641 (-)
ENSDARG00000061908	mfsd12a	2: 23081247 ~ 23103149 (+)
ENSDARG00000069114	unc93b1	1: 44395976 ~ 44418225 (+)
ENSDARG00000074728	mfsd9	9: 6934491 ~ 6956549 (+)
ENSDARG00000041554	unc93a	20: 43379029 ~ 43389475 (+)
ENSDARG00000079571	mfsd4b	20: 3339248 ~ 3345526 (+)
ENSDARG00000030630	mfsd2aa	13: 35925490 ~ 35953596 (+)
ENSDARG00000009214	mfsd13a	12: 33894396 ~ 33915123 (+)
ENSDARG00000103235	mfsd8	12: 22628704 ~ 22645215 (+)
ENSDARG00000008263	mfsd4ab	23: 18103080 ~ 18114890 (+)
ENSDARG00000015997	mfsd5	23: 35786942 ~ 35790260 (-)
ENSDARG00000001767	slc29a2	21: 27407481 ~ 27413294 (-)
ENSDARG00000023768	mfsd4aa	11: 38429319 ~ 38458406 (+)
ENSDARG00000032318	mfsd6a	22: 12911236 ~ 12925741 (-)
ENSDARG00000087525	CABZ01045212.1	22: 36498980 ~ 36519590 (-)
ENSDARG00000103577	syngr1b	KN149779.1: 15622 ~ 18587 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (2dpf)	head	baseline	2dpf, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	NA	NA	NA
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000056833

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences