Fish Single-cell RNA Database

GENE ID: ENSDARG00000089377

Symbol	Location	Gene type	Genome version	Species
si:ch211-232p21.6	3: 39200082 ~ 39208714 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000089377 (si:ch211-232p21.6), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000086282	si:ch211-282j17.5	7: 3678848 ~ 3682688 (-)
ENSDARG00000043769	si:ch211-282j17.1	7: 3632351 ~ 3639171 (-)
ENSDARG00000095326	si:dkey-88n24.3	7: 3878593 ~ 3884424 (-)
ENSDARG00000052851	golph3	5: 41082534 ~ 41103644 (-)
ENSDARG00000089377	si:ch211-232p21.6	3: 39200082 ~ 39208714 (-)
ENSDARG00000063375	pter	2: 3603589 ~ 3616363 (-)
ENSDARG00000074995	eif2b5	2: 2904080 ~ 2917148 (+)
ENSDARG00000094370	si:ch211-125e6.13	9: 33220342 ~ 33221670 (+)
ENSDARG00000094183	si:ch211-125e6.14	9: 33222911 ~ 33223829 (+)
ENSDARG00000055833	lectin	9: 33236844 ~ 33238249 (+)
ENSDARG00000056510	gstk1	16: 32009203 ~ 32013929 (-)
ENSDARG00000093119	gstk4	16: 31982083 ~ 31991377 (-)
ENSDARG00000092052	gstk4	16: 31982149 ~ 32008281 (-)
ENSDARG00000019585	gstk2	16: 30933044 ~ 31006689 (+)
ENSDARG00000041248	si:dkey-241l7.6	20: 54013212 ~ 54034543 (-)
ENSDARG00000090889	NA	14: 36886950 ~ 36893215 (+)
ENSDARG00000033227	lect2l	14: 36885524 ~ 36887063 (+)
ENSDARG00000089681	btf3l4	11: 13024002 ~ 13055807 (+)
ENSDARG00000044225	NA	10: 8660654 ~ 8672820 (-)
ENSDARG00000012535	epx	25: 3119810 ~ 3139805 (-)
--	si:cabz01083442.1	--

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type	NA	NA	NA
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
GSE158142 (2dpf)	head	baseline	2dpf, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	NA	NA	NA
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment	NA	NA	NA
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment	NA	NA	NA
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000089377

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences