Fish Single-cell RNA Database

GENE ID: ENSDARG00000056773

Symbol	Location	Gene type	Genome version	Species
zgc:163079	3: 19557604 ~ 19561058 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000056773 (zgc:163079), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000053630	si:dkey-182o15.5	7: 29509255 ~ 29515727 (+)
ENSDARG00000056773	zgc:163079	3: 19557604 ~ 19561058 (-)
ENSDARG00000090900	apnl	3: 31249885 ~ 31254979 (-)
ENSDARG00000060655	BX005421.2	3: 3992590 ~ 4007814 (+)
ENSDARG00000092920	si:ch211-106h4.12	2: 31665836 ~ 31669111 (+)
ENSDARG00000033684	oxgr1a.1	1: 2048047 ~ 2051599 (-)
ENSDARG00000069566	mucms1	1: 45149844 ~ 45157243 (-)
ENSDARG00000025783	si:ch211-125e6.11	9: 33207574 ~ 33209659 (+)
ENSDARG00000041433	si:dkey-7c18.24	20: 46039591 ~ 46043405 (+)
ENSDARG00000024522	prf1.6	8: 29670527 ~ 29677302 (-)
ENSDARG00000078841	si:ch211-195b13.6	19: 24938136 ~ 24958393 (-)
ENSDARG00000089216	zmp:0000001268	21: 42870101 ~ 42876565 (-)
ENSDARG00000079713	ccl27b	10: 2669405 ~ 2671295 (+)
ENSDARG00000030778	BX323854.1	24: 39990695 ~ 39992254 (+)
ENSDARG00000093491	si:dkey-78l4.8	22: 19478140 ~ 19482177 (+)
ENSDARG00000014623	si:ch211-212d10.1	22: 18530395 ~ 18537415 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Periderm cells (cluster: 16)	potential marker	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	Endothelium (cluster: 7)	potential marker	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	Gills (cluster: 13)	potential marker	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	Gills (cluster: 8)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000056773

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences