Fish Single-cell RNA Database

GENE ID: ENSDARG00000002760

Symbol	Location	Gene type	Genome version	Species
gdf5	6: 52637308 ~ 52661824 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000002760 (gdf5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000016231	bcap29	4: 2655358 ~ 2666310 (+)
ENSDARG00000104100	bmpr1ba	5: 7488064 ~ 7712160 (-)
ENSDARG00000079323	rgmb	5: 52256885 ~ 52277643 (-)
ENSDARG00000058819	nog1	3: 10310090 ~ 10312232 (-)
ENSDARG00000094579	b4galnt2.1	3: 23063718 ~ 23085279 (+)
ENSDARG00000002760	gdf5	6: 52637308 ~ 52661824 (-)
ENSDARG00000011941	bmpr2a	6: 12797648 ~ 12868401 (-)
ENSDARG00000104700	acvr2ab	6: 1724889 ~ 1740371 (+)
ENSDARG00000089077	rgs1	2: 6511499 ~ 6519017 (-)
ENSDARG00000103108	acvr2bb	2: 51818039 ~ 51854668 (+)
ENSDARG00000030350	mnx2b	1: 5449777 ~ 5455502 (-)
ENSDARG00000070579	ggact.3	1: 2446996 ~ 2453185 (-)
ENSDARG00000070581	ggact.1	1: 2454094 ~ 2457546 (-)
ENSDARG00000076480	mcf2lb	9: 29581662 ~ 29616590 (+)
ENSDARG00000011188	acvr2aa	9: 25380758 ~ 25444091 (-)
ENSDARG00000020057	bmpr2b	9: 12959760 ~ 13111163 (+)
ENSDARG00000030494	hjv	16: 42883799 ~ 42894628 (-)
ENSDARG00000011635	scxb	16: 31396647 ~ 31402154 (+)
ENSDARG00000028163	prg4b	20: 34029820 ~ 34039638 (+)
ENSDARG00000029546	grem1a	20: 29469753 ~ 29471577 (-)
ENSDARG00000104618	grem1b	17: 80167 ~ 86548 (-)
ENSDARG00000056057	grem2a	17: 19730001 ~ 19749179 (+)
ENSDARG00000052615	tnmd	14: 40641350 ~ 40722928 (+)
ENSDARG00000037639	nkx3-2	14: 212867 ~ 215051 (-)
ENSDARG00000019728	bmpr1aa	13: 22555342 ~ 22619790 (+)
ENSDARG00000012248	rgma	18: 24919614 ~ 24932329 (+)
ENSDARG00000105045	bmpr1ab	12: 25950834 ~ 26022663 (-)
ENSDARG00000053528	nog3	12: 32388860 ~ 32390444 (+)
ENSDARG00000104082	trps1	19: 45375669 ~ 45650994 (-)
ENSDARG00000035695	scxa	19: 3001473 ~ 3009570 (+)
ENSDARG00000006110	chrd	15: 46790676 ~ 46828958 (-)
ENSDARG00000007407	barx1	11: 27543093 ~ 27545719 (+)
ENSDARG00000102742	bmpr1bb	10: 1082961 ~ 1180314 (-)
ENSDARG00000043066	nog2	24: 38814734 ~ 38816725 (-)
ENSDARG00000002192	aspn	22: 10479965 ~ 10487490 (-)
--	nog5	--

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type	NA	NA	NA
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells	NA	NA	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000002760

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences