Fish Single-cell RNA Database

GENE ID: ENSDARG00000075886

Symbol	Location	Gene type	Genome version	Species
vwa5b2	2: 44984509 ~ 45027754 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000075886 (vwa5b2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000008485	lrp3	7: 38278860 ~ 38310177 (+)
ENSDARG00000035147	lrwd1	5: 61475346 ~ 61504874 (+)
ENSDARG00000104024	ccdc137	3: 12893141 ~ 12903609 (-)
ENSDARG00000011519	myl4	3: 22222244 ~ 22242868 (-)
ENSDARG00000042128	pacsin1b	6: 54187643 ~ 54271549 (+)
ENSDARG00000074690	ppm1j	6: 48425366 ~ 48473694 (-)
ENSDARG00000038754	plk3	2: 35603637 ~ 35611789 (+)
ENSDARG00000079777	map6d1	2: 44697568 ~ 44720551 (-)
ENSDARG00000102557	ftr87	2: 51037175 ~ 51059691 (-)
ENSDARG00000024365	crlf1a	2: 41876595 ~ 41920632 (+)
ENSDARG00000075886	vwa5b2	2: 44984509 ~ 45027754 (-)
ENSDARG00000026990	klhl6	2: 36646451 ~ 36659156 (+)
ENSDARG00000077022	fam131a	2: 16846772 ~ 16867937 (+)
ENSDARG00000067701	myoz3a	14: 923522 ~ 933630 (+)
ENSDARG00000099724	relt	18: 2600959 ~ 2668698 (-)
ENSDARG00000073810	thbs2b	12: 30653047 ~ 30681927 (+)
ENSDARG00000077098	trim65	12: 45225166 ~ 45238759 (-)
ENSDARG00000070952	fam131ba	19: 9533008 ~ 9604115 (+)
ENSDARG00000098377	tnfrsf11b	19: 142044 ~ 148055 (+)
ENSDARG00000031698	mylk2	23: 32039386 ~ 32060885 (+)
ENSDARG00000038123	myl9a	23: 42810055 ~ 42823356 (+)
ENSDARG00000002192	aspn	22: 10479965 ~ 10487490 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	Enteroendocrine (cluster: 6)	potential marker	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 10)	potential marker	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 13)	potential marker	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000075886

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences