Fish Single-cell RNA Database

GENE ID: ENSDARG00000037487

Symbol	Location	Gene type	Genome version	Species
march1	1: 19708508 ~ 19756359 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000037487 (march1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000095968	erlin2	5: 35458346 ~ 35478425 (+)
ENSDARG00000086523	ch25hl3	5: 35463688 ~ 35508088 (+)
ENSDARG00000104069	rnf170	5: 337215 ~ 343477 (+)
ENSDARG00000014083	wdr82	6: 41452979 ~ 41461390 (+)
ENSDARG00000094792	twf2a	6: 41463785 ~ 41501766 (+)
ENSDARG00000025404	ube2g2	6: 8598428 ~ 8609395 (+)
ENSDARG00000011983	zgc:136908	1: 55786986 ~ 55810730 (-)
ENSDARG00000037487	march1	1: 19708508 ~ 19756359 (+)
ENSDARG00000076627	smg9	16: 24721556 ~ 24733321 (+)
ENSDARG00000079553	cd83	16: 38394371 ~ 38397359 (+)
ENSDARG00000021991	erlin1	13: 24701406 ~ 24717618 (-)
ENSDARG00000070831	rftn1a	19: 20301373 ~ 20388345 (-)
ENSDARG00000016782	huwe1	23: 28494189 ~ 28568978 (+)
ENSDARG00000035332	cfap298	10: 33573838 ~ 33579162 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Green cone opsin (cluster: 8)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000037487

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences