Fish Single-cell RNA Database

GENE ID: ENSDARG00000055833

Symbol	Location	Gene type	Genome version	Species
lectin	9: 33236844 ~ 33238249 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000055833 (lectin), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000086282	si:ch211-282j17.5	7: 3678848 ~ 3682688 (-)
ENSDARG00000043769	si:ch211-282j17.1	7: 3632351 ~ 3639171 (-)
ENSDARG00000089958	si:dkey-88n24.10	7: 3814931 ~ 3826834 (-)
ENSDARG00000095326	si:dkey-88n24.3	7: 3878593 ~ 3884424 (-)
ENSDARG00000046092	si:ch211-283g2.3	5: 4232196 ~ 4245186 (-)
ENSDARG00000089377	si:ch211-232p21.6	3: 39200082 ~ 39208714 (-)
ENSDARG00000008835	si:dkey-46g23.5	3: 3432960 ~ 3448095 (-)
ENSDARG00000079425	si:dkey-12f6.5	3: 495748 ~ 506241 (-)
ENSDARG00000076778	si:ch73-343l4.5	1: 55908578 ~ 55918530 (-)
ENSDARG00000095127	si:ch73-343l4.6	1: 55920864 ~ 55922057 (-)
ENSDARG00000092502	si:ch73-343l4.3	1: 55925810 ~ 55930414 (-)
ENSDARG00000079903	si:ch73-343l4.2	1: 55938565 ~ 55942055 (-)
ENSDARG00000038682	zgc:171687	1: 58912051 ~ 58913813 (-)
ENSDARG00000055833	lectin	9: 33236844 ~ 33238249 (+)
ENSDARG00000041248	si:dkey-241l7.6	20: 54013212 ~ 54034543 (-)
ENSDARG00000089478	si:dkey-241l7.4	20: 54024559 ~ 54025947 (+)
ENSDARG00000069411	cx34.5	20: 40757141 ~ 40760217 (-)
ENSDARG00000095867	si:ch73-132k15.2	8: 50134007 ~ 50135528 (-)
ENSDARG00000077741	zgc:175135	11: 18037729 ~ 18039583 (+)
ENSDARG00000079534	zgc:175135	11: 18130300 ~ 18132066 (+)
ENSDARG00000087245	CR847844.1	10: 23537576 ~ 23541888 (+)
ENSDARG00000089869	zgc:172218	22: 25236657 ~ 25237839 (+)
ENSDARG00000089525	si:dkeyp-98a7.5	22: 25693295 ~ 25711403 (+)
ENSDARG00000107226	si:dkeyp-98a7.3	22: 25693297 ~ 25694563 (+)
ENSDARG00000094674	si:dkeyp-98a7.8	22: 25720725 ~ 25721994 (+)
ENSDARG00000087584	si:dkeyp-98a7.9	22: 25733817 ~ 25744301 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000055833

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences