Fish Single-cell RNA Database

GENE ID: ENSDARG00000086172

Symbol	Location	Gene type	Genome version	Species
NA	9: 5271524 ~ 5318873 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000086172 (NA), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000036096	smad3a	7: 34102661 ~ 34149263 (-)
ENSDARG00000014309	spaw	5: 68878124 ~ 68885081 (+)
ENSDARG00000060309	srgap3	6: 41554794 ~ 41757181 (+)
ENSDARG00000052142	acvr1bb	6: 2174082 ~ 2198683 (+)
ENSDARG00000040177	rgs16	6: 35443430 ~ 35446110 (-)
ENSDARG00000099979	tgfbr3	6: 24398907 ~ 24598752 (+)
ENSDARG00000104700	acvr2ab	6: 1724889 ~ 1740371 (+)
ENSDARG00000099677	bambib	2: 4402765 ~ 4408818 (+)
ENSDARG00000024759	inhbab	2: 21485492 ~ 21504467 (+)
ENSDARG00000103108	acvr2bb	2: 51818039 ~ 51854668 (+)
ENSDARG00000077643	lypd6b	9: 23142170 ~ 23181062 (-)
ENSDARG00000011188	acvr2aa	9: 25380758 ~ 25444091 (-)
ENSDARG00000040777	inhbb	9: 36967294 ~ 36974879 (+)
ENSDARG00000086172	NA	9: 5271524 ~ 5318873 (-)
ENSDARG00000043436	si:dkey-5n18.1	20: 17038903 ~ 17041025 (-)
ENSDARG00000044059	lft2	17: 8308182 ~ 8312923 (-)
ENSDARG00000037995	gdf3	17: 4239437 ~ 4252221 (-)
ENSDARG00000019367	tgfb3	17: 52059020 ~ 52091999 (-)
ENSDARG00000010207	smad3b	18: 19772874 ~ 19806209 (+)
ENSDARG00000059173	gdf2	12: 2648043 ~ 2651276 (+)
ENSDARG00000018968	acvr1ba	23: 27800519 ~ 27822920 (-)
ENSDARG00000057096	ndr1	21: 21010786 ~ 21013085 (+)
ENSDARG00000044924	gdf11	11: 15613218 ~ 15756385 (+)
ENSDARG00000006389	smad2	10: 14871136 ~ 14943281 (-)
ENSDARG00000035095	tdgf1	10: 1955475 ~ 1961930 (-)
ENSDARG00000012671	inhbaa	24: 3050020 ~ 3062610 (+)
ENSDARG00000042947	mstna	22: 12790837 ~ 12795340 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	NA	NA	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors	NA	NA	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	NA	NA	NA
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture	NA	NA	NA
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000086172

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences