|
Dataset ID |
Tissue / Organ |
Experiment type |
Sample |
Cell type |
Marker class |
Evidence |
|
GSE158849 (labeled) |
embryo |
baseline |
6hpf, WT, 4sUTP injected (labeled) |
Axial mesoderm cells (cluster: 6)
|
potential marker
|
NA
|
|
GSE126647 (control) |
embryo |
baseline |
1.17dpf, control nkx2.5:ZsYellow+ cells |
Differentiated art.CMs (cluster: 2)
|
potential marker
|
NA
|
|
PRJNA734348 (dome, control) |
embryo |
baseline |
4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) |
Dorsal margin (cluster: 2)
|
potential marker
|
NA
|
|
PRJNA564810 (1dpf) |
embryo |
baseline |
1dpf, a single-cell transcriptome atlas for zebrafish development |
Heart primordium (cluster: 30)
|
potential marker
|
NA
|
|
GSE173972 (WT, ezh1+|+) |
embryo |
baseline |
1.25dpf, Kdrl-positive embryos |
|
|
|
|
GSE158849 (unlabeled) |
embryo |
baseline |
6hpf, WT, 4sUTP injected (unlabeled) |
|
|
|
|
GSE106587 (WT) |
embryo |
baseline |
12hpf, 6 somites, wild-type TLAB embryo |
|
|
|
|
GSE126647 (Pbx4-depleted) |
embryo |
growth |
1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells |
|
|
|
|
PRJNA734348 (dome, dnmt1) |
embryo |
growth |
4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) |
|
|
|
|
PRJNA734348 (shield, control) |
embryo |
baseline |
6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) |
|
|
|
|
PRJNA734348 (shield, dnmt1) |
embryo |
growth |
6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) |
|
|
|
|
GSE168695 (5dpf) |
embryo |
baseline |
5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
|
|
|
|
PRJNA640816 (2dpf) |
embryo |
baseline |
2dpf, FACS isolated -4.9sox10:EGFP+ cells |
|
|
|
|
PRJNA640816 (2.9dpf) |
embryo |
baseline |
2.9dpf, FACS isolated -4.9sox10:EGFP+ cells |
|
|
|
|
PRJNA706197 (20hpf) |
embryo |
baseline |
20hpf, FACS sorted sox10:nEOS cells |
|
|
|
|
PRJNA706197 (18hpf) |
embryo |
baseline |
18hpf, FACS sorted sox10:nEOS cells |
|
|
|
|
PRJNA564810 (5dpf) |
embryo |
baseline |
5dpf, a single-cell transcriptome atlas for zebrafish development |
|
|
|
|
PRJNA564810 (2dpf) |
embryo |
baseline |
2dpf, a single-cell transcriptome atlas for zebrafish development |
|
|
|
|
GSE158142 (12hpf) |
head |
baseline |
12hpf, 6 somites, untreatment |
|
|
|
|
GSE158142 (20hpf) |
head |
baseline |
20hpf, 21-22 somites, untreatment |
|
|
|
|
GSE158142 (24hpf) |
head |
baseline |
24hpf, untreatment |
|
|
|
|
GSE158142 (3dpf) |
head |
baseline |
3dpf, untreatment |
|
|
|
|
GSE150498 (untreated ctrl) |
intestine |
baseline |
6dpf, untreated ctrl |
|
|
|
|
GSE150498 (DSS treated) |
intestine |
disease |
6dpf, DSS treated |
|
|
|
|
GSE150498 (wildtype, untreated) |
intestine |
baseline |
6dpf, wildtype, untreated |
|
|
|
|
GSE150498 (nod2-|-, untreated) |
intestine |
disease |
6dpf, nod2-/-, untreated |
|
|
|
|
GSE150498 (wildtype, 1X DSS) |
intestine |
disease |
6dpf, wildtype, 1X DSS |
|
|
|
|
GSE150498 (nod2-|-, 1X DSS) |
intestine |
disease |
6dpf, nod2-/-, 1X DSS |
|
|
|
|
GSE150498 (nod2-|-, 2X DSS) |
intestine |
disease |
6dpf, nod2-/-, 2X DSS |
|
|
|
|
GSE150498 (nod2-|-, 2X DSS+BZA) |
intestine |
disease |
6dpf, nod2-/-, 2X DSS+BZA |
|
|
|
|
GSE122680 (14dpf) |
retina |
baseline |
14dpf, WT, untreatment |
|
|
|
|
PRJNA672101 (nrl-KO) |
retina |
growth |
5mpf, three retinas from nrl-KO zebrafsih |
|
|
|
|
PRJNA672101 (WT) |
retina |
baseline |
5mpf, three retinas from WT zebrafsih |
|
|
|
|
GSE152982 (wild type) |
trunk |
baseline |
1.25dpf, untreatment |
|
|
|
|
GSE131136 (all) |
trunk, skin |
baseline |
5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone |
|
|
|
|
GSE176129 (pdgfrb-positive) |
whole body |
baseline |
5dpf, FACS-isolated pdgfrb-positive cells |
|
|
|
|
GSE158099 (WT) |
whole body |
baseline |
16dpf, cd41:GFPlow-WT |
|
|
|
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
16dpf, cd41:GFPlow-runx1-/- |
|
|
|
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
16dpf, cd41:GFPlow-runx1-/- |
|
|
|