Fish Single-cell RNA Database

GENE ID: ENSDARG00000004586

Symbol	Location	Gene type	Genome version	Species
ntrk1	16: 45796602 ~ 45854882 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000004586 (ntrk1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045544	hgfa	4: 19710657 ~ 19742303 (-)
ENSDARG00000059043	ntf3	4: 4397503 ~ 4431975 (-)
ENSDARG00000045873	frs2a	4: 2092683 ~ 2099581 (+)
ENSDARG00000094132	igf1	4: 17310143 ~ 17326717 (+)
ENSDARG00000018817	bdnf	7: 31924983 ~ 31941670 (-)
ENSDARG00000088708	ngfra	3: 20156956 ~ 20231781 (+)
ENSDARG00000104483	gipc1	3: 49126103 ~ 49138004 (-)
ENSDARG00000014050	ngfb	6: 49169420 ~ 49215827 (-)
ENSDARG00000075437	shc1	16: 22781854 ~ 22863603 (-)
ENSDARG00000004586	ntrk1	16: 45796602 ~ 45854882 (-)
ENSDARG00000103542	vegfaa	16: 4287542 ~ 4317879 (-)
ENSDARG00000017338	kidins220b	20: 29743904 ~ 29783644 (+)
ENSDARG00000034610	insb	14: 28563081 ~ 28568152 (-)
ENSDARG00000075014	sqstm1	14: 16765992 ~ 16771405 (+)
ENSDARG00000052739	egf	14: 36279826 ~ 36325558 (-)
ENSDARG00000014946	angpt2a	13: 6295173 ~ 6306886 (+)
ENSDARG00000089223	ngfrb	12: 9949941 ~ 10038870 (-)
ENSDARG00000030364	angpt1	19: 46812272 ~ 46957968 (-)
ENSDARG00000038442	plcg1	23: 2789422 ~ 2872819 (+)
ENSDARG00000058961	ngfa	23: 4929442 ~ 4975517 (-)
ENSDARG00000060006	nedd4l	21: 10890258 ~ 11054876 (-)
ENSDARG00000060734	hesx1	11: 42600731 ~ 42635440 (+)
ENSDARG00000039959	gdnfa	10: 1396940 ~ 1414161 (+)
ENSDARG00000070917	kitlga	25: 18118906 ~ 18140537 (-)
ENSDARG00000037353	frs2b	25: 34727928 ~ 34740627 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
GSE158142 (2dpf)	head	baseline	2dpf, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000004586

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences