Fish Single-cell RNA Database

GENE ID: ENSDARG00000087474

Symbol	Location	Gene type	Genome version	Species
ccr6a	20: 30610547 ~ 30614519 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000087474 (ccr6a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000103208	il17ra1b	4: 57580303 ~ 57585518 (+)
ENSDARG00000058389	ccl19a.1	5: 13353866 ~ 13392962 (+)
ENSDARG00000095747	cxcl11.8	5: 38752287 ~ 38753942 (+)
ENSDARG00000094706	cxcl11.6	5: 42076672 ~ 42077575 (-)
ENSDARG00000035632	ccl19a.2	5: 13373593 ~ 13376424 (+)
ENSDARG00000052158	il23r	6: 34868156 ~ 34895175 (+)
ENSDARG00000044561	ccr7	6: 10923105 ~ 10927766 (-)
ENSDARG00000055186	ccr9a	2: 32796873 ~ 32799083 (+)
ENSDARG00000007358	cxcr3.1	16: 11853212 ~ 11859309 (-)
ENSDARG00000086616	cabz01093075.1	16: 8716800 ~ 8725803 (+)
ENSDARG00000087474	ccr6a	20: 30610547 ~ 30614519 (+)
ENSDARG00000041919	ccl38.1	20: 39332579 ~ 39333799 (-)
ENSDARG00000041917	ccl38a.4	20: 38285671 ~ 38286553 (+)
ENSDARG00000038968	ccr6b	17: 51642687 ~ 51651631 (-)
ENSDARG00000037116	cxcl12a	13: 30804367 ~ 30819715 (+)
ENSDARG00000010514	cxcr5	18: 43891051 ~ 43894087 (+)
ENSDARG00000004473	tbx21	12: 28749189 ~ 28770817 (+)
ENSDARG00000074772	ccl44	11: 6182680 ~ 6188413 (-)
ENSDARG00000070873	ccl25b	11: 6259048 ~ 6265723 (-)
ENSDARG00000079713	ccl27b	10: 2669405 ~ 2671295 (+)
ENSDARG00000094002	ccl34b.4	24: 27416592 ~ 27419198 (-)
ENSDARG00000093098	ccl34b.8	24: 27450085 ~ 27452488 (-)
ENSDARG00000071499	cxcl32b.1	24: 27511734 ~ 27512851 (+)
ENSDARG00000094511	ccl20b	24: 26006730 ~ 26009612 (+)
ENSDARG00000102945	ccl39.2	25: 13017489 ~ 13029702 (-)
ENSDARG00000096060	ccl39a.10	25: 25202213 ~ 25202523 (+)
ENSDARG00000102519	ccl33.2	25: 12849609 ~ 12851118 (+)
ENSDARG00000070378	ccl35.2	25: 25172983 ~ 25176139 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000087474

EXPRESSION

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