Fish Single-cell RNA Database

GENE ID: ENSDARG00000086956

Symbol	Location	Gene type	Genome version	Species
si:dkey-241l7.3	20: 54027778 ~ 54029122 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000086956 (si:dkey-241l7.3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000016538	zgc:55888	4: 9467049 ~ 9476418 (+)
ENSDARG00000086282	si:ch211-282j17.5	7: 3678848 ~ 3682688 (-)
ENSDARG00000043769	si:ch211-282j17.1	7: 3632351 ~ 3639171 (-)
ENSDARG00000095326	si:dkey-88n24.3	7: 3878593 ~ 3884424 (-)
ENSDARG00000008835	si:dkey-46g23.5	3: 3432960 ~ 3448095 (-)
ENSDARG00000079425	si:dkey-12f6.5	3: 495748 ~ 506241 (-)
ENSDARG00000077975	si:ch73-343l4.8	1: 55891376 ~ 55896332 (-)
ENSDARG00000076778	si:ch73-343l4.5	1: 55908578 ~ 55918530 (-)
ENSDARG00000038682	zgc:171687	1: 58912051 ~ 58913813 (-)
ENSDARG00000094370	si:ch211-125e6.13	9: 33220342 ~ 33221670 (+)
ENSDARG00000086956	si:dkey-241l7.3	20: 54027778 ~ 54029122 (+)
ENSDARG00000069411	cx34.5	20: 40757141 ~ 40760217 (-)
ENSDARG00000095867	si:ch73-132k15.2	8: 50134007 ~ 50135528 (-)
ENSDARG00000008075	illr4	19: 40167363 ~ 40175800 (-)
ENSDARG00000087363	si:dkeyp-46h3.6	19: 27561664 ~ 27564458 (-)
ENSDARG00000059049	zgc:174904	19: 5690933 ~ 5699703 (-)
ENSDARG00000077741	zgc:175135	11: 18037729 ~ 18039583 (+)
ENSDARG00000089869	zgc:172218	22: 25236657 ~ 25237839 (+)
ENSDARG00000107226	si:dkeyp-98a7.3	22: 25693297 ~ 25694563 (+)
ENSDARG00000094674	si:dkeyp-98a7.8	22: 25720725 ~ 25721994 (+)
ENSDARG00000087584	si:dkeyp-98a7.9	22: 25733817 ~ 25744301 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000086956

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences