Fish Single-cell RNA Database

GENE ID: ENSDARG00000099390

Symbol	Location	Gene type	Genome version	Species
lama2	20: 1903481 ~ 1979652 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000099390 (lama2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000102066	ntn4	7: 19334314 ~ 19369002 (-)
ENSDARG00000057427	sv2ba	7: 15266093 ~ 15306015 (+)
ENSDARG00000035471	si:dkey-220k22.1	5: 31480342 ~ 31591000 (+)
ENSDARG00000105223	pmp22a	3: 50861176 ~ 50865079 (-)
ENSDARG00000053158	prss56	2: 45049290 ~ 45058240 (+)
ENSDARG00000069946	itga6b	1: 31019165 ~ 31064706 (+)
ENSDARG00000095915	col6a3	9: 23983866 ~ 23994225 (-)
ENSDARG00000042282	itga6a	9: 3429662 ~ 3486488 (+)
ENSDARG00000002507	itga10	16: 14276364 ~ 14353567 (-)
ENSDARG00000078717	itga8	16: 28383758 ~ 28512860 (+)
ENSDARG00000099390	lama2	20: 1903481 ~ 1979652 (+)
ENSDARG00000028507	itgb4	8: 13106760 ~ 13159587 (+)
ENSDARG00000078536	si:ch211-158d24.2	8: 41533268 ~ 41610205 (+)
ENSDARG00000056018	itga6l	14: 41528635 ~ 41600040 (-)
ENSDARG00000006353	itga5	23: 33447625 ~ 33558161 (-)
ENSDARG00000061260	si:dkey-202e22.2	11: 34760628 ~ 34779622 (+)
ENSDARG00000002494	itgb6	11: 10975012 ~ 11020857 (+)
ENSDARG00000069390	itga2.1	10: 8847033 ~ 8858205 (+)
ENSDARG00000062974	itga2.2	10: 8885769 ~ 8940896 (+)
ENSDARG00000016153	dag1	22: 33131891 ~ 33194802 (+)
ENSDARG00000059369	si:ch1073-15f12.3	22: 1073413 ~ 1079773 (-)
ENSDARG00000091833	sv2	25: 6049614 ~ 6060774 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000099390

EXPRESSION

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