Fish Single-cell RNA Database

GENE ID: ENSDARG00000089233

Symbol	Location	Gene type	Genome version	Species
csgalnact1b	8: 635704 ~ 648289 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000089233 (csgalnact1b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000034375	chst11	4: 9103182 ~ 9173552 (-)
ENSDARG00000001939	b3gat3	7: 25015151 ~ 25029261 (+)
ENSDARG00000079027	chsy1	7: 9326234 ~ 9511298 (+)
ENSDARG00000059961	chpf2	7: 41421998 ~ 41433786 (+)
ENSDARG00000028786	chst12a	3: 41726360 ~ 41732947 (+)
ENSDARG00000044341	chst7	6: 37603968 ~ 37622576 (-)
ENSDARG00000078037	chpfb	6: 13698813 ~ 13716744 (-)
ENSDARG00000063191	extl2	2: 7120582 ~ 7131691 (-)
ENSDARG00000061461	dsela	2: 27311863 ~ 27319914 (-)
ENSDARG00000078392	chpfa	9: 11245962 ~ 11263228 (-)
ENSDARG00000042557	rnf144ab	20: 29836276 ~ 29864530 (-)
ENSDARG00000043011	chst14	20: 25739979 ~ 25748407 (-)
ENSDARG00000006044	usta	20: 31309364 ~ 31427390 (-)
ENSDARG00000017988	dse	20: 535458 ~ 557724 (+)
ENSDARG00000089233	csgalnact1b	8: 635704 ~ 648289 (+)
ENSDARG00000061400	csgalnact2	13: 25569831 ~ 25581303 (-)
ENSDARG00000061070	chst3a	13: 29510023 ~ 29520852 (+)
ENSDARG00000040547	b3gat1a	18: 36105930 ~ 36135799 (-)
ENSDARG00000038414	b3galt6	11: 2685112 ~ 2690933 (+)
ENSDARG00000069472	chsy3	10: 16592851 ~ 16748593 (+)
ENSDARG00000040535	csgalnact1a	10: 8298984 ~ 8358396 (-)
ENSDARG00000076899	slc2a13b	25: 35663933 ~ 35681418 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type	NA	NA	NA
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000089233

EXPRESSION

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