Fish Single-cell RNA Database

GENE ID: ENSDARG00000052775

Symbol	Location	Gene type	Genome version	Species
opn3	13: 42245221 ~ 42265585 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000052775 (opn3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000035718	cbln6	7: 73447724 ~ 73449051 (+)
ENSDARG00000019294	cbln8	7: 73453486 ~ 73455918 (+)
ENSDARG00000052154	lix1	5: 64814482 ~ 64831207 (-)
ENSDARG00000061541	unc5db	5: 27137473 ~ 27397612 (+)
ENSDARG00000035420	ophn1	5: 35682681 ~ 35743741 (-)
ENSDARG00000059582	sowahcb	6: 68220 ~ 69904 (+)
ENSDARG00000039830	gng5	2: 6243144 ~ 6249163 (+)
ENSDARG00000039335	st6gal2a	9: 6009077 ~ 6127872 (+)
ENSDARG00000094010	swt1	20: 34343649 ~ 34388331 (-)
ENSDARG00000090503	oma1	20: 9058679 ~ 9095105 (-)
ENSDARG00000052775	opn3	13: 42245221 ~ 42265585 (+)
ENSDARG00000030626	lrit2	13: 29470442 ~ 29474304 (+)
ENSDARG00000009160	kmo	13: 42272515 ~ 42306348 (-)
ENSDARG00000003994	syt9a	18: 28988373 ~ 29060842 (+)
ENSDARG00000043102	lxn	15: 1179876 ~ 1198886 (-)
ENSDARG00000094330	si:dkey-9p24.5	23: 27352072 ~ 27356678 (+)
ENSDARG00000042970	gng8	21: 25231160 ~ 25235926 (+)
ENSDARG00000029239	syt9b	25: 15841670 ~ 15905903 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	NA	NA	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000052775

EXPRESSION

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