Fish Single-cell RNA Database

GENE ID: ENSDARG00000022048

Symbol	Location	Gene type	Genome version	Species
tlr4bb	13: 18523661 ~ 18528862 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000022048 (tlr4bb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000053131	irak3	4: 12782134 ~ 12790990 (-)
ENSDARG00000098486	tollip	7: 72276511 ~ 72290596 (+)
ENSDARG00000088717	ecrg4b	6: 15268685 ~ 15300140 (+)
ENSDARG00000056087	ecrg4a	9: 6371919 ~ 6380653 (-)
ENSDARG00000056160	hspd1	9: 32286605 ~ 32300783 (-)
ENSDARG00000036308	nod1	16: 53710416 ~ 53734405 (+)
ENSDARG00000092470	thbd	20: 51464670 ~ 51466071 (+)
ENSDARG00000090945	si:ch211-170d8.8	8: 39742459 ~ 39760427 (-)
ENSDARG00000017884	bgna	8: 14104496 ~ 14126646 (-)
ENSDARG00000019742	tlr4ba	13: 18514788 ~ 18517453 (+)
ENSDARG00000022048	tlr4bb	13: 18523661 ~ 18528862 (+)
ENSDARG00000075671	tlr4al	13: 18520738 ~ 18523378 (+)
ENSDARG00000074371	tirap	18: 48753162 ~ 48755037 (-)
ENSDARG00000040319	CABZ01041494.1	18: 46798159 ~ 46799199 (+)
ENSDARG00000030479	hmgb1b	15: 31513065 ~ 31516583 (-)
ENSDARG00000089404	si:dkey-24p1.7	15: 38157487 ~ 38177768 (-)
ENSDARG00000002945	bgnb	23: 20014030 ~ 20051369 (-)
ENSDARG00000043894	si:ch211-214k5.3	10: 24935765 ~ 24937070 (-)
ENSDARG00000057090	zmp:0000001103	10: 23548674 ~ 23550956 (+)
ENSDARG00000031749	NA	10: 1899595 ~ 1900662 (+)
ENSDARG00000099175	hmgb1a	10: 36026576 ~ 36032038 (+)
ENSDARG00000010169	myd88	24: 20188914 ~ 20192996 (-)
ENSDARG00000090649	ly86	24: 2460178 ~ 2467667 (-)
ENSDARG00000013351	cirbpb	22: 18542010 ~ 18546649 (-)
ENSDARG00000102493	ticam1	22: 4442473 ~ 4445833 (+)
ENSDARG00000062204	sigirr	25: 22107643 ~ 22146309 (+)
ENSDARG00000100534	irak4	25: 768014 ~ 774471 (-)
--	ghitm	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Immune cells (cluster: 20)	potential marker	NA
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000022048

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences