Fish Single-cell RNA Database

GENE ID: ENSDARG00000024771

Symbol	Location	Gene type	Genome version	Species
slc24a5	18: 5213338 ~ 5227420 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000024771 (slc24a5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000100420	tpcn2	7: 55005229 ~ 55051692 (-)
ENSDARG00000029204	tyrp1a	7: 74084203 ~ 74090168 (-)
ENSDARG00000017115	kctd10	5: 19436483 ~ 19444949 (-)
ENSDARG00000058771	nav1b	6: 54888493 ~ 55022544 (+)
ENSDARG00000077858	asip1	6: 49975910 ~ 49983329 (-)
ENSDARG00000061303	oca2	6: 37894220 ~ 38054851 (+)
ENSDARG00000006560	irf4a	2: 854444 ~ 879800 (-)
ENSDARG00000061908	mfsd12a	2: 23081247 ~ 23103149 (+)
ENSDARG00000056151	tyrp1b	1: 19332837 ~ 19346048 (+)
ENSDARG00000069989	bnc2	1: 27023687 ~ 27212459 (+)
ENSDARG00000006427	fabp2	1: 25848231 ~ 25851575 (+)
ENSDARG00000060671	lct	9: 46369932 ~ 46399611 (-)
ENSDARG00000092404	NA	9: 46387419 ~ 46399611 (-)
ENSDARG00000006008	dct	9: 53327332 ~ 53352682 (+)
ENSDARG00000099088	edar	9: 56103173 ~ 56172757 (+)
ENSDARG00000103396	znf804b	16: 27957808 ~ 27998856 (+)
ENSDARG00000057166	lrmda	13: 16922705 ~ 17464654 (-)
ENSDARG00000024771	slc24a5	18: 5213338 ~ 5227420 (+)
ENSDARG00000020237	mc1r	18: 31226288 ~ 31227615 (-)
ENSDARG00000063186	NA	18: 8382131 ~ 8398972 (-)
ENSDARG00000011076	zgc:91968	19: 4990320 ~ 4999232 (+)
ENSDARG00000039077	tyr	15: 43799258 ~ 43818697 (+)
ENSDARG00000079148	nckap5l	23: 24600494 ~ 24661950 (+)
ENSDARG00000002593	slc45a2	21: 19445942 ~ 19484289 (+)
ENSDARG00000077229	ano8b	11: 5965168 ~ 6001845 (-)
ENSDARG00000091298	pmela	11: 3254252 ~ 3272020 (+)
ENSDARG00000114472	ctxn3	10: 16188761 ~ 16192613 (+)
--	zgc:194261	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells	Pigment cells (cluster: 7)	potential marker	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	Pigment cells (cluster: 5)	potential marker	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Melanophores (cluster: 45)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000024771

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences