Fish Single-cell RNA Database

GENE ID: ENSDARG00000089486

Symbol	Location	Gene type	Genome version	Species
cplx3b	18: 5677508 ~ 5692292 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000089486 (cplx3b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000077986	NA	7: 19882066 ~ 19900002 (+)
ENSDARG00000060034	tmem151ba	20: 51312883 ~ 51334529 (+)
ENSDARG00000021869	rcan2	20: 39055432 ~ 39188476 (-)
ENSDARG00000061044	si:dkey-72l14.3	8: 25973151 ~ 25980694 (-)
ENSDARG00000079878	tmem151bb	17: 3183276 ~ 3190070 (-)
ENSDARG00000110320	si:dkey-13p1.4	17: 31580960 ~ 31591422 (+)
ENSDARG00000061918	cplx2	14: 25534604 ~ 25577094 (-)
ENSDARG00000089486	cplx3b	18: 5677508 ~ 5692292 (-)
ENSDARG00000034168	serpini1	18: 5137241 ~ 5170417 (+)
ENSDARG00000099038	kcng1	23: 39281229 ~ 39333313 (+)
--	hrh1	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Bipolar cells (cluster: 13)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000089486

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences