Fish Single-cell RNA Database

GENE ID: ENSDARG00000041645

Symbol	Location	Gene type	Genome version	Species
sb:cb37	15: 21137046 ~ 21155657 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000041645 (sb:cb37), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000051890	hp	7: 56577522 ~ 56585738 (+)
ENSDARG00000009313	napsa	3: 25121156 ~ 25133244 (+)
ENSDARG00000098824	cdh22	6: 56638688 ~ 56877366 (-)
ENSDARG00000093845	si:ch211-1f22.12	1: 56992262 ~ 56996143 (+)
ENSDARG00000096670	si:ch211-1f22.16	1: 57040472 ~ 57044846 (+)
ENSDARG00000096523	si:ch73-94k4.5	1: 57151926 ~ 57160654 (+)
ENSDARG00000096671	si:dkey-27j5.10	1: 57132140 ~ 57236167 (+)
ENSDARG00000096534	si:dkey-27j5.10	1: 57218301 ~ 57224222 (+)
ENSDARG00000086166	si:ch211-286b5.9	1: 55348537 ~ 55353978 (+)
ENSDARG00000101532	si:ch211-1f22.3	1: 56801021 ~ 56805426 (+)
ENSDARG00000092322	si:ch211-152f2.1	1: 56843411 ~ 56845476 (+)
ENSDARG00000089237	vsig10l	16: 50183190 ~ 50203058 (-)
ENSDARG00000040944	ntd5	16: 13568697 ~ 13595027 (-)
ENSDARG00000058053	serping1	8: 13960655 ~ 13972626 (-)
ENSDARG00000045142	hbae5	12: 20342451 ~ 20353541 (+)
ENSDARG00000045144	zgc:163057	12: 20336070 ~ 20337274 (+)
ENSDARG00000116617	spaca4l	19: 18739085 ~ 18751905 (+)
ENSDARG00000041645	sb:cb37	15: 21137046 ~ 21155657 (-)
ENSDARG00000090969	cbln18	15: 556956 ~ 568645 (-)
ENSDARG00000096965	si:dkey-238d18.13	15: 38006366 ~ 38007002 (+)
ENSDARG00000091388	si:ch73-380l3.5	15: 38071874 ~ 38073442 (+)
ENSDARG00000029493	f9b	10: 26747755 ~ 26757486 (+)
ENSDARG00000017314	cela1.6	22: 7439186 ~ 7447391 (+)
ENSDARG00000043175	cela1.1	22: 7462997 ~ 7470338 (+)
ENSDARG00000095462	cela1.2	22: 7472420 ~ 7476352 (+)
ENSDARG00000043173	cela1.3	22: 7480465 ~ 7483755 (+)
ENSDARG00000043171	cela1.4	22: 7486867 ~ 7492548 (+)
ENSDARG00000043168	cela1.5	22: 7497319 ~ 7508894 (+)
ENSDARG00000077058	cela1.5	22: 7742211 ~ 7754391 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Hepatocytes (cluster: 9)	potential marker	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Hepatocytes (cluster: 1)	potential marker	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	Melanoma cells (cluster: 8)	potential marker	NA
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases	Melanoma cells (cluster: 8)	potential marker	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000041645

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences