Fish Single-cell RNA Database

GENE ID: ENSDARG00000042180

Symbol	Location	Gene type	Genome version	Species
foxl2a	15: 7054754 ~ 7058214 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000042180 (foxl2a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000037491	bmp15	7: 51768343 ~ 51775688 (-)
ENSDARG00000087166	figla	5: 13839316 ~ 13848296 (-)
ENSDARG00000007349	dmrt1	5: 44944778 ~ 44991344 (+)
ENSDARG00000035290	dmrt3a	5: 45000597 ~ 45003863 (+)
ENSDARG00000015072	dmrt2a	5: 45007962 ~ 45013409 (+)
ENSDARG00000037782	sox8b	3: 62397718 ~ 62403550 (-)
ENSDARG00000043923	sox9b	3: 62521041 ~ 62527696 (-)
ENSDARG00000067669	zglp1	6: 153146 ~ 158614 (+)
ENSDARG00000067966	fem1a	2: 58868109 ~ 58869453 (-)
ENSDARG00000078625	fgf9	9: 19604867 ~ 19610436 (-)
ENSDARG00000104340	rspo1	16: 33772902 ~ 33817828 (-)
ENSDARG00000038006	osr2	16: 54402310 ~ 54405976 (-)
ENSDARG00000042014	cyp11c1	16: 54459135 ~ 54471235 (-)
ENSDARG00000039412	dmrta2	8: 16257220 ~ 16259063 (-)
ENSDARG00000003229	gdf9	14: 22457230 ~ 22464183 (+)
ENSDARG00000053569	sox3	14: 32742701 ~ 32744464 (-)
ENSDARG00000041348	cyp19a1a	18: 39620535 ~ 39636348 (-)
ENSDARG00000062445	pias1b	18: 19990412 ~ 20025364 (+)
ENSDARG00000007990	wt1b	18: 45594085 ~ 45617146 (-)
ENSDARG00000003293	sox9a	12: 1947593 ~ 1951284 (-)
ENSDARG00000105301	sox8a	12: 1072486 ~ 1085227 (-)
ENSDARG00000042180	foxl2a	15: 7054754 ~ 7058214 (+)
ENSDARG00000075301	gsdf	21: 198269 ~ 202014 (+)
ENSDARG00000030297	sox13	11: 37768298 ~ 37831776 (+)
ENSDARG00000056541	nr0b1	11: 29682909 ~ 29685853 (-)
ENSDARG00000031307	zic4	24: 4977862 ~ 4983423 (+)
ENSDARG00000056979	lhx9	22: 23238790 ~ 23253481 (-)
ENSDARG00000014357	amh	22: 20747182 ~ 20761759 (-)
ENSDARG00000031420	wt1a	25: 15178225 ~ 15214161 (-)
ENSDARG00000098360	cyp19a1b	25: 4890767 ~ 4904432 (-)
--	nobox	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	Isl1+ group (cluster: 12)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Chondrocranium cells (cluster: 35)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000042180

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences