Fish Single-cell RNA Database

GENE ID: ENSDARG00000093353

Symbol	Location	Gene type	Genome version	Species
si:ch211-263m18.4	21: 43653826 ~ 43656125 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000093353 (si:ch211-263m18.4), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000079034	zpax4	7: 20577694 ~ 20582921 (-)
ENSDARG00000116005	zgc:171446	3: 3402223 ~ 3413680 (-)
ENSDARG00000074764	zgc:171426	3: 3469600 ~ 3481763 (+)
ENSDARG00000054313	zp3f.2	2: 38285414 ~ 38288024 (-)
ENSDARG00000092090	si:ch211-125e6.12	9: 33216945 ~ 33218269 (+)
ENSDARG00000034989	retsatl	9: 44994214 ~ 44998722 (+)
ENSDARG00000042129	zp3a.1	20: 33991801 ~ 33993698 (+)
ENSDARG00000042130	zp3a.2	20: 33987465 ~ 33989427 (+)
ENSDARG00000069251	zpax1	20: 43737022 ~ 43743700 (-)
ENSDARG00000032431	mpv17	20: 38671894 ~ 38716529 (+)
ENSDARG00000105346	zp2.2	20: 54290356 ~ 54292173 (+)
ENSDARG00000089966	si:zfos-1505d6.3	20: 54299419 ~ 54301276 (+)
ENSDARG00000114958	zp3	17: 2580541 ~ 2584423 (-)
ENSDARG00000115457	zp3.2	17: 2587132 ~ 2590222 (-)
ENSDARG00000093353	si:ch211-263m18.4	21: 43653826 ~ 43656125 (-)
ENSDARG00000093255	si:dkey-229d11.3	21: 43657216 ~ 43666420 (-)
ENSDARG00000070714	zgc:173544	11: 16014527 ~ 16021522 (-)
ENSDARG00000079534	zgc:175135	11: 18130300 ~ 18132066 (+)
ENSDARG00000070709	wu:fi42e03	11: 29537756 ~ 29540033 (+)
ENSDARG00000027639	zgc:165539	10: 21541925 ~ 21545117 (-)
ENSDARG00000078394	CABZ01059627.1	10: 19569052 ~ 19570346 (+)
ENSDARG00000076949	zgc:173837	10: 19595009 ~ 19598009 (+)
ENSDARG00000079681	CABZ01059627.2	10: 19573791 ~ 19575962 (+)
ENSDARG00000087961	avd	10: 21359062 ~ 21362320 (-)
ENSDARG00000093216	si:ch211-146l10.7	24: 9995077 ~ 9997948 (-)
ENSDARG00000045423	si:ch211-146l10.8	24: 10027902 ~ 10032784 (+)
ENSDARG00000086221	si:ch211-226h8.4	22: 25184459 ~ 25185570 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000093353

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences