Fish Single-cell RNA Database

GENE ID: ENSDARG00000009612

Symbol	Location	Gene type	Genome version	Species
chia.3	11: 24013769 ~ 24016813 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000009612 (chia.3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000074547	si:ch211-240l19.8	4: 8029968 ~ 8030583 (-)
ENSDARG00000034368	hexb	5: 34600714 ~ 34616599 (-)
ENSDARG00000101055	trim35-25	3: 7920211 ~ 7940635 (-)
ENSDARG00000099684	trim35-24	3: 7943202 ~ 7948799 (-)
ENSDARG00000102368	trim35-23	3: 7952790 ~ 7961226 (-)
ENSDARG00000005673	f3b	2: 15100742 ~ 15106968 (+)
ENSDARG00000016835	tcirg1a	1: 44870880 ~ 44901163 (-)
ENSDARG00000068182	crb3b	1: 56180416 ~ 56184928 (+)
ENSDARG00000058992	cers2b	16: 1362250 ~ 1399328 (+)
ENSDARG00000041923	ccl38.6	20: 38257766 ~ 38291952 (+)
ENSDARG00000008931	renbp	8: 37030974 ~ 37043900 (-)
ENSDARG00000091001	mycbp	17: 53438795 ~ 53440284 (-)
ENSDARG00000057173	ifit8	13: 17694845 ~ 17697158 (+)
ENSDARG00000062552	lpar6a	15: 3656212 ~ 3736773 (-)
ENSDARG00000017811	si:ch211-210c8.6	23: 33752275 ~ 33757742 (+)
ENSDARG00000009612	chia.3	11: 24013769 ~ 24016813 (-)
ENSDARG00000029493	f9b	10: 26747755 ~ 26757486 (+)
ENSDARG00000052113	hexa	25: 22216723 ~ 22241312 (+)
ENSDARG00000074226	zgc:158398	25: 3749902 ~ 3759322 (-)
ENSDARG00000069673	chid1	25: 3788074 ~ 3800889 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	Brush border cells (cluster: 4)	potential marker	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000009612

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences