Fish Single-cell RNA Database

GENE ID: ENSDARG00000055014

Symbol	Location	Gene type	Genome version	Species
si:dkey-33m11.8	11: 3575963 ~ 3584553 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000055014 (si:dkey-33m11.8), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000093844	zgc:136461	7: 35068036 ~ 35069807 (+)
ENSDARG00000091996	tcnbb	5: 30614532 ~ 30615901 (-)
ENSDARG00000060012	f2r	5: 46196147 ~ 46198034 (+)
ENSDARG00000090524	f2rl2	5: 46146084 ~ 46152740 (-)
ENSDARG00000069381	si:ch211-125e6.5	9: 33061564 ~ 33063083 (-)
ENSDARG00000038321	zgc:172053	9: 33080438 ~ 33081978 (-)
ENSDARG00000025783	si:ch211-125e6.11	9: 33207574 ~ 33209659 (+)
ENSDARG00000079399	NA	14: 36869273 ~ 36878988 (+)
ENSDARG00000062319	si:dkey-103g5.3	15: 21862295 ~ 21872824 (+)
ENSDARG00000079119	si:ch211-229d2.5	15: 19797918 ~ 19803478 (+)
ENSDARG00000087476	cbln20	15: 572195 ~ 576135 (-)
ENSDARG00000100794	mmp13b	15: 33825750 ~ 33834577 (-)
ENSDARG00000089887	mmp20a	15: 25545976 ~ 25556227 (-)
ENSDARG00000089429	si:dkey-205h13.2	23: 26523998 ~ 26536055 (-)
ENSDARG00000075676	fndc7b	23: 1580294 ~ 1587955 (-)
ENSDARG00000086262	NA	21: 7947630 ~ 7953792 (-)
ENSDARG00000068856	f2rl1.1	21: 7934573 ~ 7940105 (-)
ENSDARG00000077638	NA	21: 7972805 ~ 7995994 (-)
ENSDARG00000086236	NA	21: 7998530 ~ 8003782 (-)
ENSDARG00000090041	NA	21: 8006536 ~ 8026267 (-)
ENSDARG00000087469	NA	21: 8046804 ~ 8054977 (-)
ENSDARG00000059507	NA	21: 8076666 ~ 8085635 (-)
ENSDARG00000079472	NA	21: 5846969 ~ 5856050 (-)
ENSDARG00000055014	si:dkey-33m11.8	11: 3575963 ~ 3584553 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory	Central support cells (cluster: 2)	potential marker	NA
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory	Central support cells (cluster: 2)	potential marker	NA
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory	Central support cells (cluster: 2)	potential marker	NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	Support cells (cluster: 7)	potential marker	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	Support cells (cluster: 8)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000055014

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences