Fish Single-cell RNA Database

GENE ID: ENSDARG00000059348

Symbol	Location	Gene type	Genome version	Species
rxfp3.3b	25: 1304173 ~ 1305384 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000059348 (rxfp3.3b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000014003	stard8	5: 35786141 ~ 35867256 (+)
ENSDARG00000070780	rln3a	3: 19207176 ~ 19210637 (+)
ENSDARG00000029476	ldlra	3: 19299309 ~ 19323689 (+)
ENSDARG00000070966	insl5a	6: 30703828 ~ 30708123 (+)
ENSDARG00000035862	insl3	2: 24487320 ~ 24488652 (-)
ENSDARG00000069294	insl5b	2: 10127762 ~ 10129061 (+)
ENSDARG00000090071	rxfp1	14: 48107216 ~ 48260744 (-)
ENSDARG00000102491	gpr142	12: 36054721 ~ 36070473 (-)
ENSDARG00000019660	rxfp2b	15: 31735931 ~ 31772657 (+)
ENSDARG00000103762	rln1	21: 271957 ~ 275377 (-)
ENSDARG00000090469	sycn.1	21: 25221940 ~ 25222528 (+)
ENSDARG00000090899	sycn.3	21: 25216397 ~ 25219305 (+)
ENSDARG00000032820	rxfp2a	10: 33744098 ~ 33867426 (+)
ENSDARG00000059348	rxfp3.3b	25: 1304173 ~ 1305384 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	Enteroendocrine + ILC3 (cluster: 4)	potential marker	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	Enteroendocrine + ILC3 (cluster: 6)	potential marker	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	Enteroendocrine + ILC3 (cluster: 10)	potential marker	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	Enteroendocrine + ILC3 (cluster: 10)	potential marker	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	Enteroendocrine + ILC3 (cluster: 7)	potential marker	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	Enteroendocrine + ILC3 (cluster: 8)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	Enteroendocrine + ILC3 (cluster: 10)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Enteroendocrine + ILC3 (cluster: 10)	potential marker	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000059348

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences