Fish Single-cell RNA Database

GENE ID: ENSDARG00000099637

Symbol	Location	Gene type	Genome version	Species
szl	25: 371164 ~ 375882 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000099637 (szl), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000005541	wif1	4: 12931763 ~ 12956718 (+)
ENSDARG00000052118	adamtsl5	7: 50475703 ~ 50517023 (-)
ENSDARG00000004256	wnt11f2	5: 36513605 ~ 36520117 (+)
ENSDARG00000089701	trabd2a	5: 250078 ~ 299454 (+)
ENSDARG00000056012	eve1	3: 23641935 ~ 23643830 (-)
ENSDARG00000007231	ryk	6: 27514465 ~ 27615701 (+)
ENSDARG00000037429	tll1	1: 20733102 ~ 20826023 (-)
ENSDARG00000101980	bmper	16: 7154266 ~ 7195000 (+)
ENSDARG00000028071	bmp1a	8: 51165392 ~ 51293301 (-)
ENSDARG00000099761	vox	13: 50621840 ~ 50624743 (-)
ENSDARG00000100483	vent	13: 50607664 ~ 50614639 (-)
ENSDARG00000055381	bambia	12: 23424108 ~ 23430356 (+)
ENSDARG00000045219	dkk1b	12: 6465557 ~ 6467675 (+)
ENSDARG00000006110	chrd	15: 46790676 ~ 46828958 (-)
ENSDARG00000102389	ved	10: 44997062 ~ 45002196 (-)
ENSDARG00000028053	bmp1b	10: 40848354 ~ 40939706 (-)
ENSDARG00000099637	szl	25: 371164 ~ 375882 (-)
--	twsg1b	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	Tailbud (cluster: 6)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000099637

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences