Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment |
Eye (cluster: 17) |
potential marker |
NA |
|
GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- |
Epidermal cells (cluster: 15) |
potential marker |
NA |
|
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
NCC ionocytes (cluster: 1) Ionocyte progenitors (cluster: 6) |
potential marker potential marker |
NA NA |
|
GSE158142 (3dpf) | head | baseline | 3dpf, untreatment |
Periderm cells (cluster: 9) |
potential marker |
NA |
|
GSE123241 (wild type) | neuromast | baseline | 5dpf, wild type during sensory hair cell regeneration, lateral line sensory |
Hair cells (cluster: 7) |
potential marker |
NA |
|
GSE123241 (fgf3 siblings) | neuromast | regeneration | 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory |
Hair cells (cluster: 6) |
potential marker |
NA |
|
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | ||||
GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment | ||||
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ | ||||
GSE130526 (fin) | dorsal and anal fin | baseline | adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry | ||||
GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo | ||||
GSE158849 (labeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (labeled) | ||||
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos | ||||
GSE158849 (unlabeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (unlabeled) | ||||
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | ||||
GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo | ||||
GSE173972 (KO, ezh1-|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | ||||
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum | ||||
GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment | ||||
GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment | ||||
GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment | ||||
GSE158142 (2dpf) | head | baseline | 2dpf, untreatment | ||||
GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment | ||||
GSE158142 (14hpf) | head | baseline | 14hpf, 10 somites, untreatment | ||||
GSE158142 (24hpf) | head | baseline | 24hpf, untreatment | ||||
GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment | ||||
GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl | ||||
GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated | ||||
GSE123241 (fgf3 mutants) | neuromast | regeneration | 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory | ||||
GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg | ||||
GSE163907 (24hpf) | trunk | baseline | 24hpf, trunk tg(sox10:GFP) positive cells | ||||
GSE159709 (melanoma) | tumor | disease | adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells | ||||
GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT | ||||
GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (WT) | whole body | baseline | 10dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (WT) | whole body | baseline | 6dpf, cd41:GFPlow-WT | ||||
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells |