Fish Spatial Expression Database

GENE ID: ENSDARG00000094132

Symbol	Location	Gene type	Genome version	Species
igf1	4: 17310143 ~ 17326717 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000094132 (igf1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000094132	igf1	4: 17310143 ~ 17326717 (+)
ENSDARG00000018817	bdnf	7: 31924983 ~ 31941670 (-)
ENSDARG00000036041	f2	7: 38750871 ~ 38760158 (+)
ENSDARG00000017676	mmp2	7: 35410050 ~ 35432901 (-)
ENSDARG00000053362	cilp	7: 31432140 ~ 31441420 (-)
ENSDARG00000034434	igf1rb	7: 15446229 ~ 15610129 (+)
ENSDARG00000067714	hspb3	5: 40296551 ~ 40297003 (-)
ENSDARG00000035350	ins	5: 37854685 ~ 37857696 (+)
ENSDARG00000038059	grb2b	3: 25432419 ~ 25492495 (-)
ENSDARG00000037836	igfals	3: 45845007 ~ 45848257 (-)
ENSDARG00000054239	ghrl	6: 40437987 ~ 40439615 (+)
ENSDARG00000052470	igfbp2a	6: 20921542 ~ 20952187 (-)
ENSDARG00000039264	igfbp5a	6: 20910551 ~ 20918694 (+)
ENSDARG00000038666	igfbp1b	2: 124433 ~ 127945 (-)
ENSDARG00000011948	insra	2: 37544951 ~ 37632896 (-)
ENSDARG00000076020	pappa2	2: 34986201 ~ 35103069 (-)
ENSDARG00000037099	irs2a	1: 29211540 ~ 29228393 (+)
ENSDARG00000076814	gzm3.4	9: 32670526 ~ 32672129 (-)
ENSDARG00000093990	gzm3.3	9: 32667169 ~ 32668928 (-)
ENSDARG00000078451	gzm3	9: 32654554 ~ 32656656 (-)
ENSDARG00000055986	gzm3.2	9: 32657695 ~ 32663496 (-)
ENSDARG00000025348	igfbp5b	9: 46820636 ~ 46842179 (-)
ENSDARG00000069133	mstnb	9: 40939336 ~ 40943137 (+)
ENSDARG00000004586	ntrk1	16: 45796602 ~ 45854882 (-)
ENSDARG00000006094	igf2r	20: 42563618 ~ 42660656 (+)
ENSDARG00000004111	esr1	20: 26359756 ~ 26383375 (-)
ENSDARG00000034610	insb	14: 28563081 ~ 28568152 (-)
ENSDARG00000027423	igf1ra	18: 20881462 ~ 21047580 (-)
ENSDARG00000014490	tac1	19: 25649626 ~ 25653185 (+)
ENSDARG00000054087	irs1	15: 35888549 ~ 35930070 (-)
ENSDARG00000090833	igfbp6b	23: 36601984 ~ 36605837 (+)
ENSDARG00000086551	irs4a	21: 43515673 ~ 43527198 (-)
ENSDARG00000071524	insrb	22: 10927370 ~ 11054244 (-)
ENSDARG00000014859	NA	--
ENSDARG00000014947	NA	--
ENSDARG00000017389	NA	--
ENSDARG00000059544	NA	--
ENSDARG00000075031	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample C)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838133	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE115140 (cancer)	tumor	ST	cancer	adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding	GSM3167486	GSE115140

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE104057 (heart replicate1)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788518	GSE104057
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350
cvab004 (S2)	heart	baseline	late embryo, 1.08dpf, untreatment	S2	cvab004
cvab004 (S4)	heart	baseline	late embryo, 1.08dpf, untreatment	S4	cvab004

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000094132

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.