Fish Spatial Expression Database

GENE ID: ENSDARG00000020057

Symbol	Location	Gene type	Genome version	Species
bmpr2b	9: 12959760 ~ 13111163 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000020057 (bmpr2b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000045909	dynlt1	4: 386435 ~ 390442 (-)
ENSDARG00000037491	bmp15	7: 51768343 ~ 51775688 (-)
ENSDARG00000053209	smad6a	7: 34182963 ~ 34192834 (-)
ENSDARG00000061769	bmp10	5: 21211135 ~ 21214299 (+)
ENSDARG00000052846	fsta	5: 40504910 ~ 40510399 (-)
ENSDARG00000002760	gdf5	6: 52637308 ~ 52661824 (-)
ENSDARG00000052142	acvr1bb	6: 2174082 ~ 2198683 (+)
ENSDARG00000014986	acvr1l	2: 41524238 ~ 41543762 (+)
ENSDARG00000025372	admp	2: 53483322 ~ 53500424 (-)
ENSDARG00000020057	bmpr2b	9: 12959760 ~ 13111163 (+)
ENSDARG00000030494	hjv	16: 42883799 ~ 42894628 (-)
ENSDARG00000041430	bmp2b	20: 45893173 ~ 45899149 (+)
ENSDARG00000094627	NA	17: 24602633 ~ 24603925 (-)
ENSDARG00000013409	bmp2a	17: 4227254 ~ 4231532 (-)
ENSDARG00000019995	bmp4	17: 50564070 ~ 50586135 (+)
ENSDARG00000042784	gdf7	17: 30835076 ~ 30839338 (-)
ENSDARG00000037238	smad5	14: 26467120 ~ 26498325 (-)
ENSDARG00000003229	gdf9	14: 22457230 ~ 22464183 (+)
ENSDARG00000019728	bmpr1aa	13: 22555342 ~ 22619790 (+)
ENSDARG00000031763	smad6b	18: 19648275 ~ 19699061 (+)
ENSDARG00000103679	bmp16	18: 48793536 ~ 48812996 (+)
ENSDARG00000059173	gdf2	12: 2648043 ~ 2651276 (+)
ENSDARG00000055381	bambia	12: 23424108 ~ 23430356 (+)
ENSDARG00000035677	bmp8a	19: 35019304 ~ 35035857 (-)
ENSDARG00000005510	gdf6b	19: 22999181 ~ 23002883 (+)
ENSDARG00000018968	acvr1ba	23: 27800519 ~ 27822920 (-)
ENSDARG00000063230	bmp7b	23: 6421414 ~ 6522099 (-)
ENSDARG00000018260	bmp7a	11: 7107798 ~ 7147540 (-)
ENSDARG00000057992	fstb	10: 8968203 ~ 8976823 (+)
ENSDARG00000075747	zfyve16	10: 2975974 ~ 3026523 (+)
ENSDARG00000015686	bmp6	24: 7861373 ~ 7935809 (+)
ENSDARG00000014357	amh	22: 20747182 ~ 20761759 (-)
ENSDARG00000045632	NA	--
ENSDARG00000005600	NA	--
ENSDARG00000056406	NA	--
ENSDARG00000004965	NA	--
ENSDARG00000075729	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE115140 (cancer)	tumor	ST	cancer	adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding	GSM3167486	GSE115140

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE104057 (heart replicate1)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788518	GSE104057
GSE104057 (heart replicate2)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788519	GSE104057
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000020057

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.