Fish Spatial Expression Database

GENE ID: ENSDARG00000056330

Symbol	Location	Gene type	Genome version	Species
mhc2dbb	18: 29922939 ~ 29925717 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000056330 (mhc2dbb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000007836	ctsla	5: 44804791 ~ 44810920 (+)
ENSDARG00000011701	ctsll	5: 24305877 ~ 24309667 (+)
ENSDARG00000019525	tbcelb	5: 63248266 ~ 63286077 (-)
ENSDARG00000089622	fgd5b	6: 40482330 ~ 40499799 (+)
ENSDARG00000040251	ctsk	16: 29492749 ~ 29502787 (+)
ENSDARG00000074656	ctss2.1	16: 29509133 ~ 29513434 (+)
ENSDARG00000013771	ctss2.2	16: 29514473 ~ 29519977 (+)
ENSDARG00000043854	ppil4	20: 2982381 ~ 3004126 (-)
ENSDARG00000074816	si:zfos-367g9.1	8: 36354125 ~ 36362830 (+)
ENSDARG00000070206	si:zfos-2070c2.1	8: 36377006 ~ 36387387 (-)
ENSDARG00000031745	mhc2a	8: 36472444 ~ 36475328 (-)
ENSDARG00000068286	slc7a4	8: 36500061 ~ 36515907 (+)
ENSDARG00000055120	ctsba	17: 32622931 ~ 32631514 (+)
ENSDARG00000009087	cd74a	14: 3038473 ~ 3052361 (+)
ENSDARG00000052855	ctso	14: 36752033 ~ 36763302 (-)
ENSDARG00000063095	ctsf	14: 7140997 ~ 7164646 (+)
ENSDARG00000039150	lgmn	13: 36037970 ~ 36050327 (-)
ENSDARG00000071168	zmp:0000001138	13: 47803499 ~ 47810394 (-)
ENSDARG00000056330	mhc2dbb	18: 29922939 ~ 29925717 (-)
ENSDARG00000041108	ctsh	18: 26422124 ~ 26428525 (+)
ENSDARG00000095254	si:dkey-239j18.2	12: 16592408 ~ 16595406 (-)
ENSDARG00000039173	ctslb	12: 16617138 ~ 16619757 (-)
ENSDARG00000089806	si:dkey-239j18.3	12: 16634442 ~ 16636627 (-)
ENSDARG00000075527	zgc:174154	12: 16758972 ~ 16764751 (-)
ENSDARG00000095744	si:dkey-269i1.4	12: 16874645 ~ 16877136 (-)
ENSDARG00000094559	zgc:174855	12: 16938807 ~ 16941319 (-)
ENSDARG00000079376	zgc:174153	12: 16949391 ~ 16951851 (+)
ENSDARG00000032353	tiprl	10: 15970 ~ 22780 (+)
ENSDARG00000086294	NA	--
ENSDARG00000001832	NA	--
ENSDARG00000020286	NA	--
ENSDARG00000055441	NA	--
ENSDARG00000096425	NA	--
ENSDARG00000053739	NA	--
ENSDARG00000079593	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample A)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838131	GSE159709
	GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE104057 (heart replicate1)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788518	GSE104057
	GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000056330

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.