Fish Spatial Expression Database

GENE ID: ENSDARG00000045638

Symbol	Location	Gene type	Genome version	Species
slc13a1	25: 27923846 ~ 27932723 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000045638 (slc13a1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000045863	asb15b	4: 4120570 ~ 4129187 (-)
ENSDARG00000003615	slc26a3.2	4: 18804317 ~ 18823032 (+)
ENSDARG00000038359	enosf1	7: 57108823 ~ 57134010 (+)
ENSDARG00000007080	rhcgl1	6: 36381709 ~ 36391687 (+)
ENSDARG00000053961	slc2a11a	6: 40975655 ~ 40992683 (-)
ENSDARG00000056551	slc22a13a	2: 23731194 ~ 23745290 (+)
ENSDARG00000012903	slc34a2a	1: 14432434 ~ 14442902 (+)
ENSDARG00000037861	slc2a3b	16: 12474861 ~ 12496632 (-)
ENSDARG00000005867	gon4l	16: 28994709 ~ 29024769 (+)
ENSDARG00000020114	slc20a1a	8: 31057115 ~ 31075015 (-)
ENSDARG00000060796	slc20a2	8: 29770098 ~ 29851706 (-)
ENSDARG00000011618	slc26a2	14: 25438015 ~ 25452503 (-)
ENSDARG00000029894	slc2a15a	13: 28417297 ~ 28442086 (+)
ENSDARG00000060879	slc28a1	18: 26829086 ~ 26850069 (+)
ENSDARG00000053525	enpp7.2	12: 32423375 ~ 32426685 (-)
ENSDARG00000036865	slc2a12	23: 31608259 ~ 31633310 (-)
ENSDARG00000036864	slc34a2b	23: 1078072 ~ 1104995 (+)
ENSDARG00000055523	slc22a6l	21: 28478663 ~ 28494322 (+)
ENSDARG00000029832	slc26a1	21: 20324562 ~ 20329541 (-)
ENSDARG00000070214	slc41a1	11: 37948839 ~ 37997419 (-)
ENSDARG00000054447	slc29a1b	11: 43419809 ~ 43458612 (+)
ENSDARG00000062873	slc2a11l	10: 17485945 ~ 17501528 (-)
ENSDARG00000010641	slc20a1b	10: 17713022 ~ 17728165 (+)
ENSDARG00000052330	slc4a2b	24: 33301129 ~ 33366188 (-)
ENSDARG00000059166	slc22a13b	24: 20006711 ~ 20016817 (-)
ENSDARG00000015749	hps3	22: 38202614 ~ 38224321 (-)
ENSDARG00000045633	asb15a	25: 27822188 ~ 27843066 (-)
ENSDARG00000061899	iqub	25: 27873671 ~ 27912373 (+)
ENSDARG00000045638	slc13a1	25: 27923846 ~ 27932723 (+)
ENSDARG00000031651	NA	--
ENSDARG00000077225	NA	--
ENSDARG00000086642	NA	--
ENSDARG00000088983	NA	--
ENSDARG00000091378	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample C)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838133	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
	GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE104057 (heart replicate2)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788519	GSE104057
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000045638

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.