Fish Spatial Expression Database

GENE ID: ENSDARG00000004150

Symbol	Location	Gene type	Genome version	Species
grm2a	6: 42051480 ~ 42112191 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000004150 (grm2a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000036045	penkb	7: 58686860 ~ 58696086 (+)
ENSDARG00000004150	grm2a	6: 42051480 ~ 42112191 (-)
ENSDARG00000058165	htr2ab	6: 10077756 ~ 10088463 (+)
ENSDARG00000097596	tac3b	6: 39184236 ~ 39187657 (+)
ENSDARG00000004869	penka	2: 11508691 ~ 11512819 (-)
ENSDARG00000075043	si:dkeyp-123h10.2	1: 50847783 ~ 50859054 (-)
ENSDARG00000052713	lrrtm1	1: 42776553 ~ 42779075 (-)
ENSDARG00000077165	kcnj3a	9: 4478199 ~ 4511613 (-)
ENSDARG00000057029	htr2aa	9: 25198249 ~ 25255490 (-)
ENSDARG00000086215	gpr156	9: 9675926 ~ 9705512 (-)
ENSDARG00000075012	glra2	9: 54891962 ~ 54940881 (+)
ENSDARG00000005371	gprc6a	16: 32152612 ~ 32159033 (+)
ENSDARG00000029511	kcns3b	20: 14114258 ~ 14118296 (+)
ENSDARG00000016454	esr2a	20: 21583639 ~ 21635659 (+)
ENSDARG00000053135	tas1r2.2	8: 46587593 ~ 46597751 (+)
ENSDARG00000055302	grid2	8: 28900689 ~ 29587703 (+)
ENSDARG00000079880	tas2r200.1	8: 30784020 ~ 30784982 (+)
ENSDARG00000074066	tas2r200.2	8: 30780985 ~ 30782089 (+)
ENSDARG00000074583	grid1a	17: 25955003 ~ 26365082 (+)
ENSDARG00000006865	glra4a	14: 39002116 ~ 39074539 (-)
ENSDARG00000021352	gria1a	14: 34125855 ~ 34276574 (-)
ENSDARG00000034181	esr2b	13: 37022601 ~ 37072558 (+)
ENSDARG00000025875	kctd2	12: 26594013 ~ 26609347 (-)
ENSDARG00000044161	grid1b	12: 12112384 ~ 12833736 (+)
ENSDARG00000061042	gabbr2	19: 34311374 ~ 34679738 (+)
ENSDARG00000016667	gabbr1b	19: 27040533 ~ 27261102 (-)
ENSDARG00000026753	grik4	15: 22722682 ~ 23188894 (+)
ENSDARG00000027041	pcdh17	11: 32576300 ~ 32723851 (-)
ENSDARG00000011640	syt5b	24: 7686464 ~ 7699356 (-)
ENSDARG00000040008	neurod6a	24: 32411753 ~ 32474949 (+)
ENSDARG00000040732	elavl2	22: 38252686 ~ 38274995 (-)
ENSDARG00000074647	NA	--
ENSDARG00000076987	NA	--
ENSDARG00000079092	NA	--
ENSDARG00000070940	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE104057 (heart replicate2)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788519	GSE104057
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350
cvab004 (S2)	heart	baseline	late embryo, 1.08dpf, untreatment	S2	cvab004

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000004150

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.