Fish Spatial Expression Database

GENE ID: ENSDARG00000012871

Symbol	Location	Gene type	Genome version	Species
npepl1	6: 49742164 ~ 49760876 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000012871 (npepl1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000020015	mrps33	4: 12102267 ~ 12106039 (-)
ENSDARG00000021859	erap1b	5: 26234425 ~ 26247973 (-)
ENSDARG00000022599	dnpep	6: 13896264 ~ 13920394 (+)
ENSDARG00000003307	stx16	6: 49722970 ~ 49740750 (+)
ENSDARG00000012871	npepl1	6: 49742164 ~ 49760876 (+)
ENSDARG00000092350	si:dkey-222h21.12	1: 58205904 ~ 58216018 (+)
ENSDARG00000079858	tmem163a	9: 23255410 ~ 23313342 (+)
ENSDARG00000080010	adh5	14: 43590816 ~ 43602968 (-)
ENSDARG00000039429	adka	13: 24918096 ~ 25199260 (-)
ENSDARG00000056640	rpia	13: 13930263 ~ 13944288 (+)
ENSDARG00000057064	enpep	13: 12543634 ~ 12581388 (-)
ENSDARG00000041083	anpepa	18: 21077528 ~ 21097663 (-)
ENSDARG00000095947	adkb	12: 46841918 ~ 46868634 (+)
ENSDARG00000039996	xkr8.3	19: 25072053 ~ 25081711 (-)
ENSDARG00000043102	lxn	15: 1179876 ~ 1198886 (-)
ENSDARG00000057426	oard1	23: 19220381 ~ 19225709 (-)
ENSDARG00000060288	plpbp	23: 33963619 ~ 33976116 (+)
ENSDARG00000044943	npepps	11: 12108355 ~ 12158412 (-)
ENSDARG00000013024	erap1a	10: 2899108 ~ 2921297 (+)
ENSDARG00000069472	chsy3	10: 16592851 ~ 16748593 (+)
ENSDARG00000045797	NA	25: 18951554 ~ 18953322 (-)
ENSDARG00000089183	ppp1r32	25: 4180301 ~ 4192637 (-)
ENSDARG00000062013	NA	--
ENSDARG00000076044	NA	--
ENSDARG00000018258	NA	--
ENSDARG00000020344	NA	--
ENSDARG00000039743	NA	--
ENSDARG00000075029	NA	--
ENSDARG00000090077	NA	--
ENSDARG00000087063	NA	--

Expression

Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
GSE159709 (Visium-sample A)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838131	GSE159709
GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709
GSE159709 (Visium-sample C)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838133	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE115140 (cancer)	tumor	ST	cancer	adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding	GSM3167486	GSE115140

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE104057 (heart replicate1)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788518	GSE104057
GSE104057 (heart replicate2)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788519	GSE104057
GSE104057 (heart replicate3)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788520	GSE104057
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350
cvab004 (S2)	heart	baseline	late embryo, 1.08dpf, untreatment	S2	cvab004
cvab004 (S3)	heart	baseline	late embryo, 1.08dpf, untreatment	S3	cvab004
cvab004 (S4)	heart	baseline	late embryo, 1.08dpf, untreatment	S4	cvab004
cvab004 (S5)	heart	baseline	late embryo, 1.08dpf, untreatment	S5	cvab004

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000012871

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.