Fish Spatial Expression Database

GENE ID: ENSDARG00000007663

Symbol	Location	Gene type	Genome version	Species
amph	2: 31891335 ~ 31937005 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000007663 (amph), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000015931	snap91b	4: 5260941 ~ 5302866 (-)
ENSDARG00000011449	fes	7: 14211322 ~ 14266466 (+)
ENSDARG00000010042	dnm1a	5: 1278092 ~ 1421927 (+)
ENSDARG00000009281	dnm1b	5: 63668735 ~ 63737734 (+)
ENSDARG00000035389	fcho2	5: 35123662 ~ 35201482 (-)
ENSDARG00000008377	epn2	3: 39656188 ~ 39690218 (+)
ENSDARG00000005679	trip10a	3: 54431093 ~ 54500354 (-)
ENSDARG00000069937	dnm2a	3: 47130912 ~ 47213115 (+)
ENSDARG00000042128	pacsin1b	6: 54187643 ~ 54271549 (+)
ENSDARG00000058820	bin1b	6: 6999487 ~ 7052603 (-)
ENSDARG00000045421	stard3nl	2: 31838442 ~ 31853345 (+)
ENSDARG00000007663	amph	2: 31891335 ~ 31937005 (-)
ENSDARG00000067958	sh3gl1a	2: 49457449 ~ 49511458 (+)
ENSDARG00000000086	itsn1	1: 46999441 ~ 47089818 (-)
ENSDARG00000023600	sh3gl2a	1: 26740718 ~ 26782573 (-)
ENSDARG00000022659	snx4	9: 38588081 ~ 38621202 (+)
ENSDARG00000042114	bin1a	9: 7410798 ~ 7444753 (-)
ENSDARG00000010411	epn1	16: 12730311 ~ 12756528 (+)
ENSDARG00000032238	dnm3a	20: 14817630 ~ 14925281 (-)
ENSDARG00000019564	asap2b	20: 29634653 ~ 29675458 (+)
ENSDARG00000078216	eps15	8: 16514830 ~ 16559241 (-)
ENSDARG00000015356	fcho1	8: 20037368 ~ 20072776 (+)
ENSDARG00000000837	snx9a	17: 33158294 ~ 33201840 (+)
ENSDARG00000058444	snx6	17: 9963436 ~ 10000339 (-)
ENSDARG00000011141	dpysl5a	17: 36898874 ~ 36936856 (-)
ENSDARG00000010181	asap2a	17: 35097024 ~ 35223482 (+)
ENSDARG00000061031	dner	18: 46699731 ~ 46763170 (-)
ENSDARG00000020798	necap1	19: 10396042 ~ 10408029 (+)
ENSDARG00000090716	cltcb	15: 17285989 ~ 17340198 (+)
ENSDARG00000039901	sh3gl2b	23: 45043301 ~ 45049044 (-)
ENSDARG00000043493	cltca	10: 28311031 ~ 28368913 (-)
ENSDARG00000025011	synj1	10: 26515946 ~ 26569350 (+)
ENSDARG00000031307	zic4	24: 4977862 ~ 4983423 (+)
ENSDARG00000071031	snx1a	25: 6016642 ~ 6049339 (-)
ENSDARG00000088388	NA	--
ENSDARG00000017298	NA	--
ENSDARG00000053356	NA	--
ENSDARG00000076591	NA	--
ENSDARG00000077521	NA	--
ENSDARG00000020270	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE104057 (heart replicate3)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788520	GSE104057
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000007663

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.