CI01000057_04927533_04931127 (CDK4)


Basic Information

Item Value
gene id CI01000057_04927533_04931127
gene name CDK4
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4927533 ~ 4931420 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04927533_04931127.mRNA
GACTTGATGCAGCAGTTGCTATGTGGTTTGGCGTTCTTGCACTCGAATCGGGTTCTCCATCGGGATCTGAAGCCGGAAAACATCCTGGTGACCAGCAGAGGGCAGGTGAAACTGGCCGACTTTGGTTTGGCGCGGATCTACAGCTGCCACATGGCGCTCACACCAGTGGTTGTGACGTTGTGGTATCGCTCTCCTGAAGTGCTGCTCCAGACCACATACGCCACACCTGTGGACATCTGGAGCACCGGCTGCATCTTCGCTGAGATGTTCAGACGCACACCGCTCTTCTGTGGAGATTCAGAGGTGGACCAGCTGGGGAAGATTTTTGCGGTGATCGGCCTGCCGTCTGAAGACGAGTGGCCGACTGATGTCACTCTGTCCCGTCAGAACTTCAGCCCTCAAAACCCTCAGCCAATCACAGACTGTGTTCCTGAGATCAGCGAGAAGGGGGCGAAGCTCTTGCTGGGGGCGCCGGCGCACGGACGCCCGCGTCACGACTCAAGACCTACGCCGATGACGCAGGCGTGA
>TU279998
TTTGCATGTGATGCAGGACTTGATGCAGCAGTTGCTATGTGGTTTGGCGTTCTTGCACTCGAATCGGGTTCTCCATCGGGATCTGAAGCCGGAAAACATCCTGGTGACCAGCAGAGGGCAGGTGAAACTGGCCGACTTTGGTTTGGCGCGGATCTACAGCTGCCACATGGCGCTCACACCAGTGGTTGTGACGTTGTGGTATCGCTCTCCTGAAGTGCTGCTCCAGACCACATACGCCACACCTGTGGACATCTGGAGCACCGGCTGCATCTTCGCTGAGATGTTCAGACGCACACCGCTCTTCTGTGGAGATTCAGAGGTGGACCAGCTGGGGAAGATTTTTGCGGTGATCGGCCTGCCGTCTGAAGACGAGTGGCCGACTGATGTCACTCTGTCCCGTCAGAACTTCAGCCCTCAAAACCCTCAGCCAATCACAGACTGTGTTCCTGAGATCAGCGAGAAGGGGGCGAAGCTCT
>TU279999
ACTACTAACTAACTCAACCAGGCCCCGCCCCTTTATTCTGCGTATGAATTATTTAAATGAGGAATATTGTGAAGAAAACTCAAGATGTAGGCGTTTCAGAAACACTGACACTGATATAGAGAAGAACTCTTTGGAACTTTACAGAGCTTTTTCATGATCAAACAGAAACATCAAACGCTAAAGAGAGATGAACATGGAAAAATCACAATAGGTGCTTTTTAATATTACTTACTTGACAGTAAAAGAAGGTGTAACCCGGATGTTATCAGCAGATGTGTTTGCATGTGATGCAGGACTTGATGCAGCAGTTGCTATGTGGTTTGGCGTTCTTGCACTCGAATCGGGTTCTCCATCGGGATCTGAAGCCGGAAAACATCCTGGTGACCAGCAGAGGGCAGGTGAAACTGGCCGACTTTGGTTTGGCGCGGATCTACAGCTGCCACATGGCGCTCACACCAGTGGTTGTGACGTTGTGGTATCGCTCTCCTGAAGTGCTGCTCCAGACCACATACGCCACACCTGTGGACATCTGGAGCACCGGCTGCATCTTCGCTGAGATGTTCAGACGCACACCGCTCTTCTGTGGAGATTCAGAGGTGGACCAGCTGGGGAAGATTTTTGCGGTGATCGGCCTGCCGTCTGAAGACGAGTGGCCGACTGATGTCACTCTGTCCCGTCAGAACTTCAGCCCTCAAAACCCTCAGCCAATCACAGACTGTGTTCCTGAGATCAGCGAGAAGGGGGCGAAGCTCT

Function

symbol description
cdk4 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation and regulation of cell cycle. Predicted to act upstream of or within phosphorylation. Predicted to be part of mediator complex. Predicted to be active in nucleus. Is expressed in oocyte stage I and ovary. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); familial melanoma; glioblastoma; obesity; and type 2 diabetes mellitus. Orthologous to human CDK4 (cyclin dependent kinase 4).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K02089 CDK4; cyclin-dependent kinase 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04927533_04931127.mRNA False 528 mRNA 0.58 5 4927533 4931127
TU279998 False 476 TUCP 0.56 4 4928744 4931143
TU279999 True 753 TUCP 0.49 4 4928744 4931420

Neighbor

gene id symbol gene type direction distance location
CI01000057_04916382_04926437 ARFGAP1 coding downstream 1096 4916287 ~ 4926437 (-)
CI01000057_04891502_04906844 ELMO2 coding downstream 20689 4890235 ~ 4906844 (-)
CI01000057_04866089_04878847 ITGA7 coding downstream 48686 4866089 ~ 4878847 (-)
CI01000057_04861618_04865902 ITGA7 coding downstream 61631 4861618 ~ 4865902 (-)
CI01000057_04794580_04834143 COL2A1 coding downstream 93104 4793517 ~ 4834429 (-)
CI01000057_05163258_05169859 NA coding upstream 231513 5162640 ~ 5170119 (-)
CI01000057_05442832_05459768 VGLL4 coding upstream 511657 5442784 ~ 5459768 (-)
CI01000057_05464070_05466835 NA coding upstream 532913 5464040 ~ 5469344 (-)
CI01000057_05486207_05495209 TAMM41 coding upstream 554913 5486040 ~ 5495657 (-)
CI01000057_05553430_05562372 NA coding upstream 620431 5551558 ~ 5562448 (-)
G246703 NA non-coding downstream 64351 4862804 ~ 4863182 (-)
G246691 NA non-coding downstream 123154 4801672 ~ 4804379 (-)
G246676 NA non-coding downstream 146481 4780766 ~ 4781052 (-)
G246669 NA non-coding downstream 177392 4749815 ~ 4750141 (-)
G246682 NA non-coding upstream 5824 4936951 ~ 4937172 (-)
G246750 NA non-coding upstream 14271 4945398 ~ 4945752 (-)
G246751 NA non-coding upstream 15260 4946387 ~ 4946622 (-)
G246753 NA non-coding upstream 18426 4949553 ~ 4952336 (-)
G246763 NA non-coding upstream 32214 4963341 ~ 4963540 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 1029842 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 3006112 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 3122380 1801528 ~ 1806454 (-)
G244358 NA other downstream 4356505 570530 ~ 571028 (-)
G246780 NA other upstream 279983 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 992413 5923540 ~ 5927295 (-)

Expression


Co-expression Network