G245467


Basic Information

Item Value
gene id G245467
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4455149 ~ 4457859 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU278644
TGCTGCAAATACTAACAATGCAACCAAATACAGAAACGTGCTGCAAATAGCACAGACCACAATGGAAATGTTGCTCGTGAAATGTTGTGAGTTTCTTATTTTAACCTCCTGATCGTTTGTGCGTTGAGTATTTGCAGCGTGATTCAGTATTTGGTTGCACTGTGAGTATTTGCTAGAGTTGTGAGTATTTTCAGCACACATGTCAAACTGATGAAGATGTTTTCTTAATTTGCTGGTGTTTTTTCTTTAGTTGTAGCATGTTGAGCTCTCTCTGCCACGGTACTTTTACAATAAACTCAGTGCAAAAAAGTTGTTGAACAGTTTGATACACAAACTGAGGCTTGTAAATGAATCTCTAAAAGAGAATTACGATGTTAATAAATAAACGCCAAGAGACCTGAAGAGGTGCTCTTGTGCCTAAAGAGAGTAAAACTAACATACGAGGGAAGGATCTGTTTTATAATTAGTTTGGGTTTTTGACACCTTGTGGTTTTCCAGGCTTTTTGTCTTGTTGCTGTCCACGGCCAGTTCCCGTCATGCCTCTGCCACGGCCACCAAAAATACCTCTGCCGGCTCCACCACCTCTTCCAGGTCCACCTCCTCTGCCTTTTCCCTGTGGCTTGTTCTGCTGCATACCTCCCCGGCCACGCCCCTTTGATATTACTTCCTCTTTCACCATATCTATGATTTCATCAGGGATTCGTAAGTATTTAATGGTGCTTCCTCTGATGTAGCATTCCGGCATCCTCCAAAATTTATCTCCATCCTGCAAATCAGAGCAGGCAGAAACCTTTACACTTCAGCAGACAGACAAATGACATACTCGCTCAATCATGTTTATGCAATCAATAACATTCCCAAGAATCCTTCGTCTCGAGGAATGAGGTTTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU278644 True 892 lncRNA 0.42 2 4455149 4457859

Neighbor

gene id symbol gene type direction distance location
CI01000057_04443549_04450402 RAB3A, RAB3A.L, RAB3AB coding upstream 4011 4443549 ~ 4451138 (+)
CI01000057_04419591_04430486 PDE4C, CRTC1B coding upstream 24663 4419591 ~ 4430486 (+)
CI01000057_04364304_04364681 NA coding upstream 90275 4359098 ~ 4365796 (+)
CI01000057_04357565_04358136 NA coding upstream 96784 4357565 ~ 4359044 (+)
CI01000057_04218508_04219283 GA45B, GADD45B, GADD45BA coding upstream 235255 4218334 ~ 4219894 (+)
CI01000057_04473417_04481843 KLHL26 coding downstream 15363 4473222 ~ 4481894 (+)
CI01000057_04491831_04508031 CRTC1 coding downstream 33972 4491831 ~ 4508535 (+)
CI01000057_04547933_04555967 RAB43 coding downstream 89898 4547757 ~ 4555988 (+)
CI01000057_04601541_04604168 NA coding downstream 143311 4601170 ~ 4604419 (+)
CI01000057_04612115_04631293 RAF1, RAF1B coding downstream 153995 4611854 ~ 4631871 (+)
G245478 NA non-coding upstream 67821 4283935 ~ 4387328 (+)
G245586 NA non-coding upstream 191689 4263225 ~ 4263460 (+)
G245583 NA non-coding upstream 194331 4260494 ~ 4260818 (+)
G245580 NA non-coding upstream 199070 4255860 ~ 4256079 (+)
G245479 NA non-coding downstream 27424 4485283 ~ 4486106 (+)
G245457 NA non-coding downstream 98850 4556709 ~ 4557013 (+)
G245464 NA non-coding downstream 122606 4580465 ~ 4583262 (+)
G245644 NA non-coding downstream 140093 4597952 ~ 4598411 (+)
G245652 NA non-coding downstream 195548 4653407 ~ 4653646 (+)
G245486 NA other upstream 243068 4209897 ~ 4212081 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other upstream 610458 3842028 ~ 3844691 (+)
G245401 NA other upstream 916707 3537569 ~ 3538442 (+)
G245231 NA other upstream 1162587 3087096 ~ 3292562 (+)
G243991 NA other upstream 1802589 2635237 ~ 2652560 (+)
G245725 NA other downstream 640826 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1116045 5564489 ~ 5579843 (+)
G245856 NA other downstream 1179795 5637654 ~ 5643340 (+)
G245857 NA other downstream 1197417 5655276 ~ 5657239 (+)
CI01000057_05912175_05916639 NA other downstream 1453954 5911767 ~ 5917211 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003896 lsm4 coding NC_007122.7 CM002895.2 6859876 ~ 6868474 (-)
rainbow trout (Oncorhynchus mykiss) G15682 LOC106573909 non-coding NC_048565.1 CM023219.2 16918993 ~ 16920932 (-)