CI01000059_00176745_00183438 (RANGRF)


Basic Information

Item Value
gene id CI01000059_00176745_00183438
gene name RANGRF
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 176705 ~ 183693 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_00176745_00183438.mRNA
GTATATAAATGGCTTTATAATTGCAGTGACGAGCACAGCTATGGCTCGGAATCTGTTTGGCGGTGCTTTATCAGCTGTTATTCCCTTCAATGCCCAGGATATTAGTGAACTGAGGCAGATCCCTGATAATCAAGAAGTGTTCGCTCACTCTCAGACAGATCAGAGTATCATCATTGAATTGCTGGAGTACCAAAGCCAAGTGCAGGATGCTGAAGCAGCCAGGTATCACTTTGAGGACGTGGCTGCCAGTAACAAGGCGGTAGAGAATGGCTCTTGGGAGGTCAGAGAGGTAAAGCAGCTCTCCCAGTCTGAGCTGTCAATGCAGGAATGCAACTCTGCCTGGCTGCTGTCTGGAGCTCAGCTGGTCTCTAAATTCAATGAGGAGCAGTACACTACTGACATCTTAGTGACGTTCAACGACCCTGTTTGTATCAACAGCAGTGCCATTGGAAATGTGGCAGCTATACCCTGGACACTACAGGACTTCCAGGGTGTTCTGCAGTCCTTCTGCATACTTGACCCTGGAGTGTTTGGGTAGATTCTTCATGCATATGTTTAAATACAAGAAAGTCTAAATATCATTACAAAAGGCTTTTTTCCCAGAAGCTTTTAAAATTTGCTTTTACAATGACTGAATGGCTTAAAACACAAACTTCACAACACCTAAAAAGCTAGAAAGCTAGAGTCTATATGAAACATTTTCCTTGTAGTGCAAGGCTTAGCATTTGTCTGTAGGTGAGGCTATGCAACAAACAAAAAAAAATAGAGAATCTTGAATTATTAAAAAGTAAAA

Function

symbol description
rangrf Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within heart contraction and heart looping. Predicted to be located in nucleus; perinuclear region of cytoplasm; and plasma membrane. Is expressed in blastomere; brain; eye; fin; and heart. Orthologous to human RANGRF (RAN guanine nucleotide release factor).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_00176745_00183438.mRNA True 793 mRNA 0.42 5 176705 183693

Neighbor

gene id symbol gene type direction distance location
CI01000059_00119105_00128880 NA coding upstream 47773 119033 ~ 128932 (+)
CI01000059_00071798_00072160 NA coding upstream 104481 71798 ~ 72224 (+)
CI01000059_00067936_00068888 NA coding upstream 107608 67936 ~ 69097 (+)
CI01000059_00047317_00051846 NA coding upstream 124822 47278 ~ 51883 (+)
CI01000059_00265853_00270206 BSPRY coding downstream 82160 265853 ~ 270772 (+)
CI01000059_00293442_00308109 TRAF2B, TRAF2 coding downstream 109749 293442 ~ 309217 (+)
CI01000059_00338849_00339271 TMEM203 coding downstream 155156 338849 ~ 339616 (+)
CI01000059_00341223_00367666 TPRN coding downstream 157530 341223 ~ 367864 (+)
CI01000059_00381312_00393910 ANAPC2 coding downstream 197345 381038 ~ 393985 (+)
G250716 NA non-coding upstream 21272 153476 ~ 155433 (+)
G250737 NA non-coding upstream 23379 152952 ~ 153326 (+)
G250703 NA non-coding upstream 44806 129013 ~ 131899 (+)
G250744 NA non-coding upstream 54631 121861 ~ 122074 (+)
G250775 NA non-coding downstream 50884 234577 ~ 234803 (+)
G250778 NA non-coding downstream 57478 241171 ~ 241526 (+)
G250779 NA non-coding downstream 59618 243311 ~ 243753 (+)
G250780 NA non-coding downstream 63057 246750 ~ 246968 (+)
G250785 NA non-coding downstream 66445 250138 ~ 250351 (+)
G251046 NA other downstream 795048 978741 ~ 979218 (+)
G251017 NA other downstream 881176 1056252 ~ 1067357 (+)
G251249 NA other downstream 1444073 1627766 ~ 1661390 (+)
CI01000059_02068570_02070710 NA other downstream 1884851 2068544 ~ 2071924 (+)
CI01000059_02133197_02134625 NA other downstream 1947799 2133003 ~ 2135347 (+)

Expression


Co-expression Network