CI01000059_00293442_00308109 (TRAF2B, TRAF2)


Basic Information

Item Value
gene id CI01000059_00293442_00308109
gene name TRAF2B, TRAF2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 293442 ~ 309217 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_00293442_00308109.mRNA
ATGTCTATGCTCAATATTACAGTGGCATTTCCTGATAATGCAGCACGAAGAGAAATTGATAGCTTGCCTGCCAAATGTCCAAATGATGGTTGTAGTTGGTCTGGTACATTGAAAGACTATGAGGGTCAACATGAAGGTCGTTGTGACTTTGAACGTGTAAAATGTGAAGCATGCCAAGCAGTCATCTTGCTTAGCGAGAAAGATCGCCACAATGAGCGGGAATGCGAGGCCAGAACCCTGAACTGCAAATACTGCAAGGTCACATTCAACTTTAAGGAAATTAAGGCCCATGATGAAATATGTCAGAAATTTCCTATGCAATGCAAAGACTGTGGTAAAAAGAAAATCCCCAGAGAGAAGGTTGACAATGGTAAGCAGCAGGAGCATGAGCAGACCAGTGTGATGGAGCATTTGCGTCTTATGCTATCTGTGCTGTCCTCTGTGCGCCTGCGAGCCGAGGGGGCTGGAGAGTGGCAGGAAGATTCCGGGCTGGGATTGTATCGCGGACCTGAAGATGCACCTCCGGCGGGGCCTAATGCTGCCGCCCATAATGCAGGAAGAGGAGGTGGTCCTGGTGTGCAGCAGAAAGTCACAGCTTTGGAGAACATAGTGTGTGTGTTGAATAGAGAGGTGGAACGTTCAGCCCTCACCCTGGAGGCACTATCCCGGCAACATCGGCTAGACCAGGAAAAGATCGAGAATTTGTCAAATAAGGTGCGACAGCTGGAACGGACTTTAACCATGCGAGACCTGCAGTTAGCAGAATCCGAGCAGTCTTTGCGGGAGCTGCAGTTTTGCACATACGATGGAGTTTTCATTTGGAAAATAGCAGACTTCTCTCGACGCAGACAAGATGCAGTGGGGGGCCGAGCACCTGCCATGTTCTCACCTGCATTCTACTCCAGTAAATATGGGTATAAGATGTGTCTGAGACTCTACCTGAATGGTGACGGCACAGGTCGGGGCACTCACCTCTCCCTGTTCTTTGTGGTCATGAGAGGCAAATACGATGCACTGCTGAAGTGGCCCTTCAGCCAGAAGGTGACATTGATGCTGTTGGACCAGAACAACAGAGAGCACATCATTGATGCCTTTAGGCCTGATGTAAGCTCCACATCCTTCCAGAGACCCATCAGTGAGATGAACATTGCTAGCGGTTGTCCTCTGTTCTGCCCCCTCGCCAAGCTGGCAGGCAAAAGCTCGTATCTGAGAGATGACACCATATTTATTAAAGCCATAGTCGACCTCACTGGCTTATAAAGCATTGGAATTATTCATAATAACAATGGATGATGATAATATTATTATATCTCATATCTCAGCTGCGGAAGCCAAACTATTTAAATGATACAATATAAAGAATAATATAAATTATAATAGCATATATTTATTCATTGATTTATTTCAGGAAATATTTTCATTGATAATAATATTAATATGTGTGTGTATGGAGTGGCAGTGCTCAAACAGACTTGCACACCAATAACTACACTATTTGGATATAACTAAATATTTAATATGCACTATATATTTACTATAATATATATGTATAGTACACATATTTAAACTATACCTATTTTGTAATAACAAAATATTAATTATGAGATTGAGATTTTTGTTTTGTGTGACCTAAAGCTGGCTGGATTTTTCATGCTGTTAAATCTGGGATGTTGTTAGGATGCTAACTGCATTTTTGAGGACATTTTTAGGGGCATGGCCACTTTTGCTGGAAGTATAGTCTATAAATAGATATGTCATCAGTCTGCTTTTATTTTACGAACTTGACTAACTTAATAATAGAGCAACTTTAATATGCATAAACTGTTTATTGAGCACTGTTAGAATCATTCAGCTCATAGAAATGAATCATTGTGCCATTTGTTCTTATAGACAAGATCTTAATATATACAGCATGTGCATGAAGCTACAATATTTGATAAAATTTCACCCAGGTAAGTTAGGAAAAAGTAAGAAACCTTAGCAGGATTGAAAGGATGTCCAAACATCCTGACTAACCAGTGCTTAAATTCACTGTAGTTCTAGCCTATTTGTAAACATCATCTGATTGTAGGTCTGGCTTTTTTTTGTTTGGGCTTGAGAATTAAATGGCTTCACAAAATATACAGCTGTAGACATTTAAACAGCTTCAAACCCTTATAAAAGGGACCAGGCATACTAAGAGCTCCTTTTTTCCTGTAACATCACTATACTTTAGGTTAGCATGGGATATTCTGGTGAATTGGATGCAGTATAAATCCTGTTCAGTTAAATAATAGTCCATGTTATTTGGATAATTAGAAATTAGTTGCTTTTGCTGGAAAGAAGAAATAGAGAAATGATGAAGAAAAACATGGTCTCTGATAAATGA

Function

symbol description
traf2b Predicted to enable tumor necrosis factor receptor binding activity; ubiquitin protein ligase binding activity; and ubiquitin-protein transferase activity. Predicted to be involved in several processes, including positive regulation of NF-kappaB transcription factor activity; positive regulation of intracellular signal transduction; and tumor necrosis factor-mediated signaling pathway. Predicted to act upstream of or within several processes, including activation of NF-kappaB-inducing kinase activity; protein autoubiquitination; and regulation of JNK cascade. Predicted to be located in cytosol. Predicted to be active in cytoplasmic side of plasma membrane. Orthologous to human TRAF2 (TNF receptor associated factor 2).
traf2 Enables several functions, including enzyme binding activity; tumor necrosis factor binding activity; and tumor necrosis factor receptor binding activity. Involved in several processes, including positive regulation of NF-kappaB transcription factor activity; positive regulation of macromolecule metabolic process; and protein ubiquitination. Located in cytosol. Part of several cellular components, including IRE1-TRAF2-ASK1 complex; TRAF2-GSTP1 complex; and tumor necrosis factor receptor superfamily complex.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K03173 TRAF2; TNF receptor-associated factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_00293442_00308109.mRNA True 2368 mRNA 0.40 8 293442 309217

Neighbor

gene id symbol gene type direction distance location
CI01000059_00265853_00270206 BSPRY coding upstream 22670 265853 ~ 270772 (+)
CI01000059_00176745_00183438 RANGRF coding upstream 109749 176705 ~ 183693 (+)
CI01000059_00119105_00128880 NA coding upstream 164510 119033 ~ 128932 (+)
CI01000059_00071798_00072160 NA coding upstream 221218 71798 ~ 72224 (+)
CI01000059_00067936_00068888 NA coding upstream 224345 67936 ~ 69097 (+)
CI01000059_00338849_00339271 TMEM203 coding downstream 29632 338849 ~ 339616 (+)
CI01000059_00341223_00367666 TPRN coding downstream 32006 341223 ~ 367864 (+)
CI01000059_00381312_00393910 ANAPC2 coding downstream 71821 381038 ~ 393985 (+)
CI01000059_00396907_00442561 NPR2 coding downstream 86967 396184 ~ 443478 (+)
CI01000059_00490117_00490491 PMCHL coding downstream 180802 490019 ~ 490609 (+)
G250706 NA non-coding upstream 3359 288388 ~ 290083 (+)
G250705 NA non-coding upstream 9516 282347 ~ 283926 (+)
G250785 NA non-coding upstream 43091 250138 ~ 250351 (+)
G250780 NA non-coding upstream 46474 246750 ~ 246968 (+)
G250779 NA non-coding upstream 49689 243311 ~ 243753 (+)
G250693 NA non-coding downstream 13758 322975 ~ 324483 (+)
G250794 NA non-coding downstream 85640 394857 ~ 395290 (+)
G250797 NA non-coding downstream 125072 434289 ~ 435194 (+)
G250812 NA non-coding downstream 149976 459193 ~ 515245 (+)
G250846 NA non-coding downstream 236122 545339 ~ 545712 (+)
G251046 NA other downstream 669524 978741 ~ 979218 (+)
G251017 NA other downstream 755652 1056252 ~ 1067357 (+)
G251249 NA other downstream 1318549 1627766 ~ 1661390 (+)
CI01000059_02068570_02070710 NA other downstream 1759327 2068544 ~ 2071924 (+)
CI01000059_02133197_02134625 NA other downstream 1822275 2133003 ~ 2135347 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030463 traf2b coding NC_007116.7 CM002889.2 54422941 ~ 54453848 (+)