CI01000059_00490117_00490491 (PMCHL)


Basic Information

Item Value
gene id CI01000059_00490117_00490491
gene name PMCHL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 490019 ~ 490609 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_00490117_00490491.mRNA
CTATAAAAATGGACCAAGTCGCCACCAACATCAGACCAGCTTCAAGAGAAGACAAGAGACAGCAGCTGAACCACTAAAGCAAACGCTCAGGATCAAGAATGAAGCTCTCCGTTGGGACCGTCCTCATCACTGTTGCACTTTTTTCAGAGTGCTACTTCAGAACCACTGCCATTCCCATGACCAAAGCTGATGAAACTGAACCAGATCTGCAAGGCTTGAGCGAGAGCTTGGAGGAGAACTCTCTGAGATCTTCACCAGGCAACTCCAGGATCATCGTGGTGGCTGACTCCAATCTGCTGAGGACCCTGATGTCTCTGAACAAAGGAGTGCCTCATCTCAGTCTCCCTGAGAACCTTCTCAGCACAGAGCGCAGAGATGTCAATTCAGACTTGAGCCCGAGCATCGCCATCATCAGAAGGGACACCATGAGGTGCATGGTGGGAAGAGTGTATCGGCCATGCTGGGAGGTGTAGGTCTTCTGGGACCAGGAGAATGCAAGCTGCTGATGACAACAGATTCACCTTCTCTAATCCACTGTTGCTTAGTGAGAATGTAAATGTTTATGCTATTTATCTGAAATGTCTCTTGCAA

Function

symbol description
pmchl Predicted to enable type 1 melanin-concentrating hormone receptor binding activity. Predicted to act upstream of or within chemical synaptic transmission and neuropeptide signaling pathway. Is expressed in diencephalon; female organism; male organism; and neurons. Orthologous to human PMCH (pro-melanin concentrating hormone).

GO:

id name namespace
GO:0030354 melanin-concentrating hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_00490117_00490491.mRNA True 591 mRNA 0.49 1 490019 490609

Neighbor

gene id symbol gene type direction distance location
CI01000059_00396907_00442561 NPR2 coding upstream 46541 396184 ~ 443478 (+)
CI01000059_00381312_00393910 ANAPC2 coding upstream 96034 381038 ~ 393985 (+)
CI01000059_00341223_00367666 TPRN coding upstream 122155 341223 ~ 367864 (+)
CI01000059_00338849_00339271 TMEM203 coding upstream 150403 338849 ~ 339616 (+)
CI01000059_00293442_00308109 TRAF2B, TRAF2 coding upstream 180802 293442 ~ 309217 (+)
CI01000059_00691603_00693842 NA coding downstream 199985 690594 ~ 694074 (+)
CI01000059_00855742_00857391 NA coding downstream 364965 855574 ~ 857391 (+)
CI01000059_00892927_00916862 TMC2A, TMC1, TMC2 coding downstream 402318 892927 ~ 918225 (+)
CI01000059_00920512_00932905 NA coding downstream 429665 920274 ~ 933233 (+)
CI01000059_00933745_00937663 ANXA1C coding downstream 442839 933448 ~ 937750 (+)
G250797 NA non-coding upstream 54825 434289 ~ 435194 (+)
G250794 NA non-coding upstream 94729 394857 ~ 395290 (+)
G250693 NA non-coding upstream 165536 322975 ~ 324483 (+)
G250706 NA non-coding upstream 199936 288388 ~ 290083 (+)
G250705 NA non-coding upstream 206093 282347 ~ 283926 (+)
G250846 NA non-coding downstream 54730 545339 ~ 545712 (+)
G250847 NA non-coding downstream 57980 548589 ~ 548811 (+)
G250884 NA non-coding downstream 175976 666585 ~ 666827 (+)
G250904 NA non-coding downstream 203494 694103 ~ 696167 (+)
G250917 NA non-coding downstream 228417 719026 ~ 720103 (+)
G251046 NA other downstream 488132 978741 ~ 979218 (+)
G251017 NA other downstream 574260 1056252 ~ 1067357 (+)
G251249 NA other downstream 1137157 1627766 ~ 1661390 (+)
CI01000059_02068570_02070710 NA other downstream 1577935 2068544 ~ 2071924 (+)
CI01000059_02133197_02134625 NA other downstream 1640883 2133003 ~ 2135347 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030469 pmchl coding NC_007116.7 CM002889.2 54685175 ~ 54685710 (+)