CI01000059_00265853_00270206 (BSPRY)


Basic Information

Item Value
gene id CI01000059_00265853_00270206
gene name BSPRY
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 265853 ~ 270772 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_00265853_00270206.mRNA
ATTGCGGTGGTCTGTGAATATGGTAAGAATTGTGTAACAAATGGACTCCGTTGGTGCGAGTTACACATTAACAGAGCAGTGTTGTCCGATTCTAGTAAAATGCTACATGCAAGATCAGACGACAAATTAGCATATTGCAAGAACAGTCCCAAGTTTCACGTGAGTGACTGGCCAGTTGCCACAACTGCAGACAAATTTAATTTCAGACTTGCGCACTCTTCAACCAGTCCACTTCCGTGTTATACACCTGCGATAGGTAGGCAGGACTCTAAAACTGGATACACCTGCGCCACGGGTATTTTACAGTATACATCAGCGAAACCAGACGAACCCCTCATATTTTATTCTGCTAAGGAACTAAACATATTATCTCTTGGTGCCATGAGTATGGAATATAGACTTTGTGAACTGGCAACGGTGTCCTTGCACGTCAATGACCCGGAGACTGACCCTGGACTGGACGAACATCCAAAACATGAAGAACGAATAAATGTATGTGAAGGCGAAGAGCTGTTTTTACACACCAATGTCACAGCAAACGGAGAATCGTCGACAAAACCTGTGCGCAAATTTGCGGAGACCCCTGTAGGCAGCGGTGCAGACTCCTTATCGGCTTCAGAAGAAGCGAAACTGTGTCCAGAACATGAATGCGAACTACAGTTGTACTGTAATACAGAAAGAAGACTGAAATGCTCGCACTGTGTGTTGGAAGGAGCTTGCCGGGGTCATACAGTGACAGAGCTGGTTACCCGGGCAACTGTAGTAAGGAATCAGTTGGTGGATGTCTGCGAAAAAATGCAGCTGCAAGCCCTGCGGATTGAACGATTCATTGACCGTACACTTACAGCAAGAGAGAAAGCTGTACAGATAGATGCAAACAGTGCAAGAGAACGAGTGTTGGCTCAGGTGAAAGTGGTGCGTGAGGCTCTTGAGGAGGAGGAGCAGCGTCTCCTAGAGGCCATACAGAGAGAAGAAGAGCGAGTGGAACAGTGCCTCCTCACTCAGAGAGCACACTGGACTCACACTCTGGAGAAACTCGCACGCACACGCACCAGCCTGGTGCACTCACTCACAAACTCAACGGATGCCATGCTTGTGAGCTCTAATGAGGAAATTAATGACAGGATTGAGGATGCAGAGGGTGTTGGTGAACCTAGAGACACAGAGCAACTGAGTTTGAACAGAGGCTGCAGTGACAGTAAACTCCTGGTGGGTTTATGGGCCAGTGCATTGCTGCTTGGGCCGCCTGCCCACAGTTCAATTATGCTACATTTTGAAAAACAAACGGTCAGTCCTCTTCTTTCCCTCTCCAACGATCAGCGCACCTTAACTTTCCTGCCCAAACGTCAGCGTCAGTTACCCCCCTATGATCCGGCACGCTTTGACAGCTGGCCTAATGCCCTCTGCTCCCCTCCCATGTCCTCTGGTACTCAGAGCTGGGTACTTGACGTGGGCACGAGTGCAGCCTTCAAAGTGGGTGTATGCTATGCCAGCATAGAACGCAAGGGGTCCGGCAATGACGCACGGCTGGGCTACAACTCAAAATCGTGGGTGCTCTCGCATTATGATGGAGACATGTCTTTCTGTCATGCTGGATGCAGTGTGGGTATTGCAGTGGCTAAGAAGCTCAGGAGACTGGGACTGCTGTTGGATTGGCCCAGTCAGACCCTGCTGTTCTATGATCCTGAATCTATGTCTGTGCTGCATGTAGTCAGACATGCTTTCAGCGAGCCGCTGCTGGCTGCCTGCGCTGTGGCTGATCAAAGCATTTCTATAGTGCACTGAACACCGGAAGAATATTAATGAAGGTTCTGAAAATCTCAAGATCTTAAAGGAATGGTAGATGCAATGCTATGCAATATCATTTGAACCAACAATATTTTTAAAAAAATTTTTACATTATCTGTGCCATTGAAGACCCATATATGCATTAAGAAGAGAAAGTGTGATAATGTCAACAACATTGTTTAATTATAAAGAAACTAATTTGCCTAATCAGAAGTTAATCAGCAATTCCTTGATTTTGCCAATCTGCTTAAAAGAGTGCTAAAGTGCGTAATTTAAATATTTTTATATTTATGCCTAAGTTATTGAAACTTAATTTTAATATGAATTCTCCATCTCTTGTAATTTGTTTGTGTTCAAATTAGTGCAATTATTGTTGACTATTTGTATTTATTATCTGCATTTCATGTGAAACTTACTTATTTGTCTGAAACAGTACACAACATGGCTGATATTGTGCTTTCATGTGACCACATGAGGCTCTGATGTCACAGGAGAGCAGGGAAATATTGGGCAGGAAACTGTTCTGACCTTTTATCTGATAATGTATGTTAAGTATTCATGCA

Function

symbol description
bspry Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human BSPRY (B-box and SPRY domain containing).

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_00265853_00270206.mRNA True 2351 mRNA 0.45 6 265853 270772

Neighbor

gene id symbol gene type direction distance location
CI01000059_00176745_00183438 RANGRF coding upstream 82160 176705 ~ 183693 (+)
CI01000059_00119105_00128880 NA coding upstream 136921 119033 ~ 128932 (+)
CI01000059_00071798_00072160 NA coding upstream 193629 71798 ~ 72224 (+)
CI01000059_00067936_00068888 NA coding upstream 196756 67936 ~ 69097 (+)
CI01000059_00047317_00051846 NA coding upstream 213970 47278 ~ 51883 (+)
CI01000059_00293442_00308109 TRAF2B, TRAF2 coding downstream 22670 293442 ~ 309217 (+)
CI01000059_00338849_00339271 TMEM203 coding downstream 68077 338849 ~ 339616 (+)
CI01000059_00341223_00367666 TPRN coding downstream 70451 341223 ~ 367864 (+)
CI01000059_00381312_00393910 ANAPC2 coding downstream 110266 381038 ~ 393985 (+)
CI01000059_00396907_00442561 NPR2 coding downstream 125412 396184 ~ 443478 (+)
G250785 NA non-coding upstream 15502 250138 ~ 250351 (+)
G250780 NA non-coding upstream 18885 246750 ~ 246968 (+)
G250779 NA non-coding upstream 22100 243311 ~ 243753 (+)
G250778 NA non-coding upstream 24327 241171 ~ 241526 (+)
G250775 NA non-coding upstream 31050 234577 ~ 234803 (+)
G250705 NA non-coding downstream 11575 282347 ~ 283926 (+)
G250706 NA non-coding downstream 17616 288388 ~ 290083 (+)
G250693 NA non-coding downstream 52203 322975 ~ 324483 (+)
G250794 NA non-coding downstream 124085 394857 ~ 395290 (+)
G250797 NA non-coding downstream 163517 434289 ~ 435194 (+)
G251046 NA other downstream 707969 978741 ~ 979218 (+)
G251017 NA other downstream 794097 1056252 ~ 1067357 (+)
G251249 NA other downstream 1356994 1627766 ~ 1661390 (+)
CI01000059_02068570_02070710 NA other downstream 1797772 2068544 ~ 2071924 (+)
CI01000059_02133197_02134625 NA other downstream 1860720 2133003 ~ 2135347 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030462 bspry coding NC_007116.7 CM002889.2 54400971 ~ 54415064 (+)