CI01000072_00404877_00406183 (DHRS13A.3, DHR13)


Basic Information

Item Value
gene id CI01000072_00404877_00406183
gene name DHRS13A.3, DHR13
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 404877 ~ 407092 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_00404877_00406183.mRNA
TGCTGGCGGGTGTTTTGGCTGTATATATACTGCTTTATTACAGCGTGTTTAAAGGAGCCAGATTTAAGAGCAGCGTCACGTTAAAGGGAAAAACAGCAATTGTTACAGGGAGTAACACAGGCATTGGCAAACCCACAGCTTTGGATCTGGCCAAAAGAGGGGCCCGAGTGATCCTCGCCTGCCGAAACAAACAGAAAGCTGAAGCTGCAGTTTATGACATAAGAAAGGAAAGTGGGAACTCCGAGGTACTGTACATGCATCTGGACCTGGCCAGTTTGAAGTCCGTGCGAGATTTTGCTGAGACTTTTCTGAAGAGTGAACCGAGACTCGACTTGCTCATTAACAATGCAGGTCTTATCGCGTCAGGCAGAACTGAAGATGGTTTTGGCATGGCGTTCGGCGTCAACCACCTGGGCCACTTTTTGCTGACGCTGTTGCTGTTGGATCGTCTAAAGCAGGCAGAGCACAGCCGTGTCGTCAACGTGTCCGCCCTGCTGCATCGGCTGGGTTCTGTCGACTTCAACCTCCTCAACACGCACAAGGATCTGGTCACAGGTCAGTCGTCCTGGGATGCCCTCAGAGCCTACTGCCACAGCAAACTCTGCAATGTGCTGTTTACCCGTGAGCTCGCAAACCGCTTGGAAGGGACGAGTGTCACGTGCTATTGCCTGCATCCAGGCGTCATAGCCACTGAGATTGGTCGGAATATGAATATGCTACAGAAGCTGCTTTACCCGGTCATGTCCAAGCTGTTTTTCCTAGACCCAGAGGGAGGTGCGCAGACTACACTTTACTGTGCTTTGCAGGAGGGACTTGAGCCTCTGAGTGGACGGTACTTCTCTTCCTGCGCTCTGCAGAATGTGAGCGCTGCCGGACGGGATGATGCCCTGGCCAGGAAGCTTTGGGAAGTGAGCGAGAGGCTGTGTGGCCTATCCTAAGTGAGCTAAGTGGAACAATAGAACTCCACACACAAAAGCCCAATAACAATAACAGTCACAGGTGGCTGGTTTTTGCATTCGGTATATGTTGTTTTAAAATGTGTTGTTGCTTTAAATGAATGCAGTATATTTAAATTAGGGGTTCACCGATATTTAATACCTGCTTGATACAATAAGCTGATGCTAATTTTTTGTAATGGCCCTATAAATTGACGATATTAACATTTTGTTTTAATCAGATAAAAATAAAACACTAAAACCTAAACTGAATTTAGGCATCACAACATTATAATGTACAGTATGAAAAATGGATATTCATATTGAGATTGGTAAAGAGAAAGTTAATAGTAAAAATACTATTAAATTATTAGTATTTTTTAACATTGACTTTAAAGTGTTAGATGATGGCAAAAGTAATCAATGTAAAAATAGTAGAAATGAGCTTAAAAATGAATTATAATTAAATTATGATTCATAAAATGTACATAAAAATGGCCAATAACTAATGTTGTACCAATGTATTGTGCATCTTTACTTTAAATGAAGCAACAATATATGCATAGCTTGGGGAACCGTAACCAAAGTAACCTTTAATGTCTCTAAGTTAATTGTAATGCTTATTATTTTTGTTGAAAATATGTAGAGATGAAGAAGAGTTTTTGTGAGCTTTGTATTAATGATCTATTGATCTATCTTTCAATCAATCTCTCTCTCTTTCTCTTTCTCTATACATCTCTTTCTCTGGACTATTTCATTGTGCTGTTCTTATAAACATGCGTGAATGTGTTATTGCTTTTTTATTATCAGTTTCTTTGACCTGAATGGGAACATTGCATCCATTTTTTTTTTTTAAACTCATGACCAATTCAAATGCCTCATGTATTTGAAAATCAAAATCATACAAAGAAA

Function

symbol description
dhrs13a.3 Predicted to enable NADP-retinol dehydrogenase activity. Predicted to be involved in retinal metabolic process. Predicted to be active in mitochondrial inner membrane. Orthologous to human DHRS13 (dehydrogenase/reductase 13).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K11169 DHRS13; dehydrogenase/reductase SDR family member 13

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_00404877_00406183.mRNA True 1847 mRNA 0.40 5 404877 407092

Neighbor

gene id symbol gene type direction distance location
CI01000072_00400359_00403220 CRYBA1A, CRB12, CRYBA1, CRYBA4 coding upstream 1363 399816 ~ 403514 (+)
CI01000072_00368515_00382013 FOXN1 coding upstream 22158 368515 ~ 382719 (+)
CI01000072_00338411_00351144 NA coding upstream 53601 337071 ~ 351288 (+)
CI01000072_00315525_00322937 SARM1 coding upstream 81808 313057 ~ 323069 (+)
CI01000072_00295802_00308710 NA coding upstream 95320 295201 ~ 309557 (+)
CI01000072_00441183_00448301 NA coding downstream 33534 440626 ~ 448472 (+)
CI01000072_00453946_00487772 NA coding downstream 46649 453741 ~ 488634 (+)
CI01000072_00603805_00621584 NA coding downstream 195550 602642 ~ 621833 (+)
CI01000072_00629638_00638277 LHX1, LHX1A, LHX1.L coding downstream 222546 629638 ~ 639351 (+)
CI01000072_00760940_00797319 BRIP1 coding downstream 353848 760940 ~ 797319 (+)
G283951 NA non-coding upstream 24719 379916 ~ 380158 (+)
G283925 NA non-coding upstream 104551 298283 ~ 300326 (+)
CI01000072_00275132_00275592 NA non-coding upstream 129384 273980 ~ 277268 (+)
G283903 NA non-coding upstream 142046 262612 ~ 262831 (+)
G283797 NA non-coding upstream 160968 240653 ~ 243909 (+)
G283927 NA non-coding downstream 233337 640429 ~ 642060 (+)
G284111 NA non-coding downstream 238579 645671 ~ 646059 (+)
G284117 NA non-coding downstream 255501 662593 ~ 662875 (+)
G284121 NA non-coding downstream 260681 667773 ~ 668011 (+)
G284296 NA non-coding downstream 338630 745722 ~ 745972 (+)
G284742 NA other downstream 1574438 1981530 ~ 1985140 (+)
G285428 NA other downstream 3563165 3970257 ~ 3976214 (+)
G286470 NA other downstream 3762012 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 3817746 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 3931627 4338719 ~ 4343266 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009283 dhrs13a.3 coding NC_007126.7 CM002899.2 28006768 ~ 28085563 (-)