G289493


Basic Information

Item Value
gene id G289493
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1295298 ~ 1315293 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU328336
TCACCTCTGCTGATTCTCCTGCAGGCGAGACCGGACCCACATCGCTTTCTCTTTCCCATATCAATCTCTCGGGCTGTTCTGAGCGTCCGGCATCCTCAAAGACTTCCCAGCCTCCGCATGCTAGCGCTCGCCTCGAGAGGACGAGAGCCGGAGCGCCGCTGGCCAGAGCTGTCTGTGAACTTCACATGTTTATCTCTCCATCTCTCTGTATGAGCTGAAGAAGAGTTCAGCATCGATGAGACGCTTTCGGCACGTTCGTGTGCTCGTGTCTTCAGCTTCAGATGAAAGTGAGGGATGAAAGTTGGAGGAGAAGCAGCTCTGAGCCTCTGCAGCATCTAATCGCTCCTCCATTTGAGCTTCGTTTGCTTTTGTTCCAGCTCTGCGTGCACGAGCCTCTCTCCTTTCATTCATTTACATCCTTTATCGGGTTTTGTTCGTCAGCAAACAAGCGCCGAGCGCGAGAGCTGAAAGAATGATGGACTGGGCGCGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU328336 True 490 lncRNA 0.53 3 1295298 1315293

Neighbor

gene id symbol gene type direction distance location
CI01000075_01206857_01230864 NA coding downstream 64434 1206857 ~ 1230864 (-)
CI01000075_01166008_01203828 NA coding downstream 91470 1164952 ~ 1203828 (-)
CI01000075_01161238_01161465 NA coding downstream 133833 1161192 ~ 1161465 (-)
CI01000075_00952466_00992777 CTNNBL1 coding downstream 302521 952139 ~ 992777 (-)
CI01000075_00885681_00895778 RANBP3B coding downstream 399520 883956 ~ 895778 (-)
CI01000075_01335455_01336921 SLC25A42.S, SLC25A42 coding upstream 19449 1334742 ~ 1337484 (-)
CI01000075_01343318_01346352 SLC25A42 coding upstream 27998 1343291 ~ 1346425 (-)
CI01000075_01358548_01364127 ARMC6 coding upstream 43255 1358548 ~ 1364488 (-)
CI01000075_01372627_01381776 BTBD2 coding upstream 56560 1371853 ~ 1384122 (-)
CI01000075_01478557_01486032 NA coding upstream 163264 1478557 ~ 1486032 (-)
G289490 NA non-coding downstream 19841 1275240 ~ 1275457 (-)
G289414 NA non-coding downstream 134153 1154048 ~ 1161145 (-)
G289461 NA non-coding downstream 184599 1110336 ~ 1110699 (-)
G289416 NA non-coding downstream 215571 1079500 ~ 1079727 (-)
G289244 NA non-coding downstream 290604 1004386 ~ 1004694 (-)
G289509 NA non-coding upstream 6853 1322146 ~ 1323050 (-)
G289510 NA non-coding upstream 8637 1323930 ~ 1324181 (-)
G289167 NA other downstream 506899 770094 ~ 788399 (-)
CI01000075_00307523_00328194 NA other downstream 966981 307523 ~ 331562 (-)
CI01000075_00275752_00278496 NA other downstream 1016758 275238 ~ 278542 (-)
G289036 NA other downstream 1180693 108703 ~ 114605 (-)
CI01000075_00022145_00044289 NA other downstream 1239534 20947 ~ 44289 (-)
G289427 NA other upstream 177030 1492323 ~ 1515938 (-)

Expression


Co-expression Network