CI01000075_01166008_01203828


Basic Information

Item Value
gene id CI01000075_01166008_01203828
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1164952 ~ 1203828 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000075_01166008_01203828.mRNA
ATGGCGGCGCTCACTCCACTCAGTCAGCTTTCAAGTGGAAATGCTGCATATGAGAGCTTCTACAGACAGGTGGATCCAGGAAATACTGGGAAAGTGGGCGCTGCAGATGCCGCTCAGTTCTTGAAGAAATCAGGGCTTTCAGACAGCACTTTGGGTCAGATCTGGGATCTGTCAGACCCTGAGAGAAAAGGTTACTTGGATAAAAAGAGAGACGCCGGCAGCCCGTCCCTGAACATCACAACCTCTGCTGCTGAGTCCAGCTGGACATTGAAGGTGCAGAATTACTGGAATAAAATGAAATTTGTGATGGAAAACTTGTTTATGCGGTCTCTCAGATTCTCTCACCGTACTTCATTGTCTCTTTTCCATTGTGTTTGGCTTCACCAGCCGGAAGATAAAGCAAAGTATGATGGGATATTTGAGAGTCTGTCTCCAGTTGGTGGGCTGCTGTCAGGTGATAAAGTGAAACCAGTCCTCATGAACTCAAACCTGCCTCTCGATGTGCTCGGAAAGATTTGGGATCTCAGTGACATTGACAAAGATGGGCACTTGGATAAAGATGAGTTTTCAGTGGCGATGCATCTGGTTTATGCAGCCAGAGAGAAGGAGCCTATGCCATCCACCCTCCCTACAACTCTCATCCCTCCATCCAAACGTAAGAAGATTCCAGGCGCTCTCCCGGGATCAGTTCCTGTTCTTCCCTCTAGTCCATTCCTCCTGATGGAGAACCTGCGTCCCGTGCCGTCGCTTTCCAAGAGTCCTCTGGGCAGCAGCACAAATCTGTCTCCATCAAGCTCATTTAAGCGCTCCACCCCGACACCACCGCAGCCTCAAACGCTCACACAGCCTTCCTCAGATCACTGGGTGGTGCCAGCGGATGACAGAGAGCAGTACGAGGAGATCTTTGATCTGGCAGACTCTGATTTTGATGGGATGGTTGGAGGAGGTGAGGTGAAGGATATCTTCATGAACTCTCGGCTGCCTCAGAGCGTCCTGGCACACATATGGTCACTGGCGGACACTCAACGTACCGGCAAACTCACCAAAGAGCAGTTCTGTCTGGCGATGCACCTGATTCAGGAGAAAGTTAAAGGAGTGGACCCTCCTCAGAGTCTGACCCCTGACATGATACCACCGTCAGAGAGAGGGGTCGCCAGCACACCTATCCTCTCTGGATTCACACCGTCAGTCATGTCTGAATTGACCCCGTTGACCAGTCTGGGCAGGGACAGCAGCAGTTCTGTTGGGTTGGTTGAGCTGACGGGAAGCAAGGATCTTGATGACATCAACCAGGAAATCTCCCAGCTGCAGAGTGAAAAACGCTTATTAGAGACAGAAATCAGACAGAAAGAAGAAGTCCTGCGACAGAAGAACAGTGAAGTCCAGGAGTTGGAGCACCAGAAACGGGGCGCTCAGGATCGACTCAGTGAGATGGAGCAACAGAGAGCCAAGCTGGAAACAACGCTGGACGAGATCAAGAACAAATGGCAGGAGGAGAACACTAAGATCACATCGCTGCAGACTCAGATCGTGTCTCAGGAGTCAGACATGCAGACGCAGGAGAAGGAGATGAGCAGAACGAAGACGGACCTGTACTGTCTTGAACAAGAGGAGCAGCGTCTGGAAGAGAGTCTGCGTGCTGGAAAAGCCAAGCTAGACAGCATCCTCAAACTGCTCAAAACATCTCAGGACGAGATGGACCAGACACGCAGTGAGCTCAGCGAGATACAGGACACCCAGCGGGAACTTAATAAGACAATCGAGCGCTACAGCAAAGCTCTCAACGACGGCGTGACCAGCCTGTCCGAACTGGACCAGCTCATCGCTGAGGAGAGCTCCAGCATCGATGGCAAGGAGGATTCGTTGGTTAAGTCCAGGATGGCCATGTTTAACAGTTCCAGCTCTCAAGGCCTGAACGCAGACCCCTTCCAGAGCGAAGACCCATTCAAAAGTGACCCCTTCAGTAAAGCTGATCCGTTTGGAGGAGATCCGTTCCAACAGAACGACCCCTTCAAAGACCCGCCAGTCCCTTCAGCAGAAGAATCAGCCAGAAGTCGAGGAGTCCCAAACCTAAAGATTCAGGTAGCGGCCAGCTTTATTTTGAGGCACTGCCTCAATTTCCTACGGAGTCATTCTATTAATAGCGCATTTATGTACACGTTTAGCTACAGGCCTTCCGAAAATAGTCCCATCCAAACAGGGAATTCTTTGTTGCTGAATGTAATGGAAAAGTCTGAGTGTCAGGACGGTGCTGCTGGAATCAGACAGCAGCTGTCTTCTCTCTCACTCTCTGTTTCTGCTCTGGTCTTGTTTTTCTCACATCCACCTCACACGGTGAACAGAGTTCAACCTCAGAGCCGACGAGCCGAAAGCCGACGTACCCACTGCCCCCTCCAAAAAAACCCGGACCACAGAGACCAGCGCCGCCTCCTTACGGGAAGAATTCGGCCATCACGCATAGCGGTTCAGTGGTTCATAATCAAGGGTTTGGTGCTCCAGCTGTTCAAAAGACACATACGGACAGAGGACCCGTCTCCTCGTCCTCTTCGTTACGGTCTGCGGTTAACCCGTCCACAGGGTTTACAGACTTTAGAGCTGTCTTTGCTGCTTACTGATGATGATGCAGCAGAACAGGAACAACAAGAGGAAGTTCTGTGGTGGAACAAACCTGGTGTTGAAGATTGGACCAAACCTTTGATTTCAAGTGAACTCATGACTCATGAACACACATGGTTCGGAAATGAGACGCAGCAGCTCGAGTGGGCCAAACGTGAGAGCCAGAGAGAGGAGGCGGAGCGTATCCGGAGGCTCCGCCTACAGGAACAACAGGACCTGGAATTGGCTCTCGCCCTCAGTCGATCTGAAATGCCCAGAACGTGAAGCTGCTACACTTTGGATTCAATCTTTCAATGAGACAACACCTAAAACTTTCAGATGAAGTTTTTGCATGAGCCTCCCCCAATCACAAGCTCTTCCTGAAGATCATTCAGGTTTGCTGTTTGCTGTCGCGCATCAACCTTTGAAGAACCCTGGACCAATGAAGTGCTCAACCACTGAATTATGCTTTGCAAAGATTATATACAGCTTTACCAAATACTGTAGATCATATGAGTGAGGTCTCTTGTGCTCTTATGCACATCATCAGTATCGTAAAAAAATATCAGCCTATGACTGCGGCCCATTTCAGTTTTGATCCGAAGTGCTTTATACATTGATTACAATCAGCTTCATCCACCAGAGGAAGTCTCAATCTGATTTTTGCTTAAATAAGACGGATGAATGACTAAATCCGTGACATTTACCCATCGTCAGTGCACTATATGATCATATATGATATGATAAATTTACATATAAACCTGTGTAATCAATGCATTCCCAACAAATCCCATTTTTCATCCCAGTTGCACGTACTGTTAATATCACACAAGTGTCATTAGCCACATTAAGATCAAATGAAGCATAATTACTTTTTGAAGGAACCTGGTGATGCTTTTTATGTGGGTTTTGCACTAGTCATAGTTCTTCAAAGATGTTGTAATAATCACTTTGAGATGTATTTGTTATTAACCCTTTAAATCTTAATCAGATCCTCTAGATGACACCAAATCACACAAACCAGCACACAGAAGGACCTCTGCCTAGTTTTAGTTTTTTGAAATAGTTTGAGAAGCATATTTTGCTTGAAGTGAAGCCTTAAACTGTATATTGAGCTCATTCTTATGTAATCATATATTTATTGCATCTGTGATACTCAACACTAAAATCAGCAGGTTATGGATTGCTTATATGCTAGAGAAGTAATTTTTGGTGTTTATATGGCTTTGATTTTCTCTTTTATCATGTTGAAGATTCTACTGACCTTATGTGTTTTGTTTCTTTTGTGGAAAAGGGTTGAAAACGATTTTACAATGTGCTGCTTTTCAGTGTTTTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000075_01166008_01203828.mRNA True 3936 mRNA 0.47 23 1164952 1203828

Neighbor

gene id symbol gene type direction distance location
CI01000075_01161238_01161465 NA coding downstream 3487 1161192 ~ 1161465 (-)
CI01000075_00952466_00992777 CTNNBL1 coding downstream 172175 952139 ~ 992777 (-)
CI01000075_00885681_00895778 RANBP3B coding downstream 269174 883956 ~ 895778 (-)
CI01000075_00749894_00757773 NA coding downstream 406397 749842 ~ 758555 (-)
CI01000075_00686719_00747700 PIEZO2 coding downstream 417252 685131 ~ 747700 (-)
CI01000075_01206857_01230864 NA coding upstream 3029 1206857 ~ 1230864 (-)
CI01000075_01335455_01336921 SLC25A42.S, SLC25A42 coding upstream 130914 1334742 ~ 1337484 (-)
CI01000075_01343318_01346352 SLC25A42 coding upstream 139463 1343291 ~ 1346425 (-)
CI01000075_01358548_01364127 ARMC6 coding upstream 154720 1358548 ~ 1364488 (-)
CI01000075_01372627_01381776 BTBD2 coding upstream 168025 1371853 ~ 1384122 (-)
G289414 NA non-coding downstream 3807 1154048 ~ 1161145 (-)
G289461 NA non-coding downstream 54253 1110336 ~ 1110699 (-)
G289416 NA non-coding downstream 85225 1079500 ~ 1079727 (-)
G289244 NA non-coding downstream 160258 1004386 ~ 1004694 (-)
G289183 NA non-coding downstream 223902 940694 ~ 941050 (-)
G289490 NA non-coding upstream 71412 1275240 ~ 1275457 (-)
G289493 NA non-coding upstream 91470 1295298 ~ 1315293 (-)
G289509 NA non-coding upstream 118318 1322146 ~ 1323050 (-)
G289510 NA non-coding upstream 120102 1323930 ~ 1324181 (-)
G289167 NA other downstream 376553 770094 ~ 788399 (-)
CI01000075_00307523_00328194 NA other downstream 836635 307523 ~ 331562 (-)
CI01000075_00275752_00278496 NA other downstream 886412 275238 ~ 278542 (-)
G289036 NA other downstream 1050347 108703 ~ 114605 (-)
CI01000075_00022145_00044289 NA other downstream 1109188 20947 ~ 44289 (-)
G289427 NA other upstream 288495 1492323 ~ 1515938 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016957 EPS15L1 coding NC_007113.7 CM002886.2 55751966 ~ 55779927 (-)