CI01000112_03933921_03937412


Basic Information

Item Value
gene id CI01000112_03933921_03937412
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3933921 ~ 3937708 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_03933921_03937412.mRNA
ATGGACAAGGAAAAATGGCACATACTTGTTACCAACCGATTTCAGGAGAAGGATCTGCAACATATTGATTTTTTGCTGAACATGAACATCTTCTGTGTGCTTGACTTTGATCCAGATTCCAACGTGTCTGGGTTATGCCATGAATACAATAAGCATCATGCAGTGAACCGCCATTTCATGCAGAACTACAAAATTCCCAGTGGCTTGAGCATCCGAGATTTTGAGAGTCATCTGCGTTTGTTTGATCAAACCAGCTGGATATTTTGCAATGGCCGGAGTGATTTCAAAGGCAACGAACCTCCCTGTGATGAGAAGACCTGGGTTAAAACAAAAAGGACCCTTCTAAAAGATTGTGTGTCATTGATCTGCAAAGATATCTTGCCCAAAGGAACCTTTCAAGTGATCTTCCTTCTTACTTCCCCCGTTGACACACCATTCCTAAACACGTTCTATGAGTTCTTTACTGACATGGAAGGACATGAAGACATTATCTGCCTTGCAGAATCGGAGGAGAATTTTAAGGACTGGCAGAGCTTTGCTCTAGGATCCTGTGACATGGAAACAGTAAACAGTTCAAGTGTAGTTGGGATGACAATAAGTCAGGTAAATGCAACCCTCCAACAGGTCCAGCCTACCACTACACGGGCCACCAAACGATTACCGATCCATGTCAAAGGGGAGTGTTTCCTTGATACTCGAGAGGAGGAAACAAGATGTTCATTGGAGATTCTGAGTCTAAACCACTGTGAAGAAACTAGTCCTGATGTCGTGGAATCTGAAAAGGAGAATATTGAGCAGCAGTTTTACCATGGAGGAAAAATAACTTGGATGAATCTCTGGCTTGCAGACAAAAAAATCGTTGGGGAGGTTATTCAAAGAGATGCTTACAATGAAGTCAACAGTCTGGTGAAAGACTGTCTTTGTTGGAGTTTAGATCGGGCACCCCTCAGCTGTATCAACATATACCATCATCCTGGCAGTGGTGGCAGTACAGTGGCAAGGCAAGTACTGTGGAATAATCGAAGGGATCTAAGGTGTGCCGTTGTAAAACCTTCATACTCAGCATCGGTTGTTTCAGAAGATGCCATTTGGCTTCGGGAATACGAAGAAAAAGATCCCCAAAAATGCCTCCCTGTTCTCCTGCTGTTTGAAGACTGTGATCAAGAGTATTTAGAAGATGTAAAGTATGAATTGGAAGTGGCTGTCAATACCAAGAAAATAGCACGTGGAACTCTCTGCTTCATTCTGCTAAGTTGTAGGCGATCGCACAATCCAGAGAAGATGTGCAAGGAATCACCTCAACAGAATGTTTCTATTACTCATAAACTATCAGAGACCGAAAAAAAACAGTTTTCCAAAAAACGACAAAGACTTGAAGAGCAGTTTAAGCCAGAATTCATTCTAACATTTGTCCTGATGAGTGAAGAATTTGAGAGCAACAAAATTGCTGAATATGTGAAGAAGTTTGTCAAGCATTTACTGCAAGACATTGACCACAAGTCTGTGGTTACAAAGCTTGTTCTGTATGTGGCATTGCTCAACACTTATGTGCAGAACTCATTCATCTCTCAGTCACATTGCGAAGCTCTCCTGGCTCTGTCCATCCATGTGGATAGGTTTCGACGACATGCCTTTGAGACTTCTCTAAGTGAGCAAGCCAAATTGGTCTTAATACACTTGAGGGACGAAAACACCTACATTAACTCCATCAGAATCATTCATCCACTGGTTGCAAAGGAAATCCTCCACCAATTTCTGGGTGACAAACAACAACAAAGTGATTTTGCTTTGGACCTTCTCAACAACGATGTGCTCTTTGAGCACAGGTTTGGTAAAGATCAATACATGAAGTTCTTGAGAGATCTGTTCATGACACGCCACAGGATCAGCAAAGGTGATAAATTTGACAGCTTTTTCTCTCCCCTAATTGAGCATGTGAGAGAGAAAGAGTGCCCAGATAAAGCCATTGAGCTTCTAAAAGCGGCTTACAAGCGCTTTAACGAAGATGCATTTTTTGCTCAACAGTTGGCTCGACTCAATTACAAACATGACAGATTTGAAGAAGCAGAAAAGTGGGCAAAAACTGCAGTAGCAAAAAGGCCAAACAATTCCTACATTCTTGATACCAGAGGTCAGGTGTACAGGCAGTGGTTCGCAGCAAAAGTCAAAGCCATGGAGCAGGATGAACAAACACCTGAAAACACAGCAGATGCTTTGAAAACAGCACTAAAAGCCATTGAATGTTTTCAGGAATGCAAGAAAGCAGCAGTTGAGGACAATGAGAACATGAACAATGCTGGCTTTTTTGGAGTAGTAGAGGTAGGATGTGCATTGCTGAAGCTAATGCGTACTCTTCATGTGTTCTCAAGAAGAAAGTCTTCAGAATTAATTAGATACCTCCTAACAGATTATATTCCTGTTGAGATAGAAAAACCATGGGAACATTTTCATTGTAAGCTGAAGAACCTCCAAAAAATAATGCTGGAAGCACTAGAATGGATTTCGGAAGACCTGAGTTACTTCCAGACTGACCTGAACACCGATGAGGAGAAGACATCTGACACTGTTGAGAGGACCATAAAGCATCCCATGCACTGGCTGGTAAATAAGTCTTCTACTTATGGCAAATACTTCAGTGATGCTTTTCTTGTTACAGATCAAAACCAAGGGAGGTTAAATCCTCTCATGAAGCGCATGATGATTTATTATTATGGTGGGGGAAACATCACAACAATTTTTTCCCTTCTAACAAACCAGAAAGATGGTAATCCTGTGAGTGTTCTGGAGCACATTATTTCACTTTACCCAAGCAATCCTATGAGGGCACAAATGCCACAGTCGGACCTTGTCAACTACATAGCATCGCACTTTGCTTTAAGTTGCCTCTCAACTCAGTCTTCTAAGCTGGCTGCATTTCAGGATCTACAAAGACTGAGTCACCAATTTCCCAAAGAGAAACAGAGATGCTTGCCAAGTGCTCTTTTCTTACTCGTCTTACTTTTCTGGCCAGAAGAGCAGGACACAGAAGAGGAGAAAGAACACAAGTATGAAACTGTTCTCTCTGCTGTTGAATATCTCCAGAGAAACTACGACAAGAAACTGAAGGACATCCCTCCAAGGAAAAAGAGGATCTACACTCATTTCTTCCTGAGCAATGGGACTGGATTTGAAAAATTTGTCCACAAGAGCAAGTTTGAAACAATCACAAAACTGTTCTCTGTTTCAGAAAAACGCCTGAAATGGTTTAGTGGAGAAGTATGGAAAATGCCAGAAATGTCTAAATTGCTGAGATGTGTCACAGGCTGGACGGAGGATGAGAAGGTATTTCTAGAGGGTCCCAAAGGAATGAAATTTCATATCCCAGCTCTTAAGTCATCCTCAATACCCCATAACAATGAGAATGTCACCTTTTACCTGGGCTTCACTCTGAAAGGACCGGTTGCATACAACATTACTGTACAAACAAACATAGACAAACCTGTGCAAGTTTAGGATAGACAAGGCAGATTGCCCAATATCTATATTTAGGTGCAAATTACATTTAAGATGGATGAAATGTCCTATATGGCTGAAAAGTTAATGTCCCTGGAAAATTAACATCAGCACTGTACATTCATAGTGAGAAATAGTTTGTTACTTTATTCAGTGTGATTGGTAAACTGCTATATTTTGTGTATAATATACTGTATTTCCCTCACAGAGATCATAAATACATAGATATGGCACATTTACATAGGAGACTTGTTTACTTGTGTTAATTAATAGGCATTGTCCTCTTTTAAAAAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_03933921_03937412.mRNA True 3788 mRNA 0.41 1 3933921 3937708

Neighbor

gene id symbol gene type direction distance location
CI01000112_03932803_03933881 NA coding upstream 9 3932803 ~ 3933912 (+)
CI01000112_03896750_03921778 ERN1 coding upstream 10757 3896750 ~ 3923164 (+)
CI01000112_03861399_03879738 TEX2 coding upstream 54169 3861399 ~ 3879752 (+)
CI01000112_03759872_03772553 AXIN2 coding upstream 160939 3759803 ~ 3772982 (+)
CI01000112_03653384_03730444 NA coding upstream 203473 3653384 ~ 3730448 (+)
CI01000112_03956622_03957718 MAFGA, MAFGB, MAFG coding downstream 18914 3956622 ~ 3957867 (+)
CI01000112_03978196_03991078 PCYT2, PCY2 coding downstream 40488 3978196 ~ 3991078 (+)
CI01000112_04004799_04012301 NA coding downstream 66867 4004575 ~ 4012680 (+)
CI01000112_04020422_04027554 NA coding downstream 82576 4020284 ~ 4027746 (+)
CI01000112_04033996_04035285 NA coding downstream 96185 4033893 ~ 4035337 (+)
G329513 NA non-coding upstream 7745 3859478 ~ 3926176 (+)
G329517 NA non-coding upstream 50977 3811534 ~ 3882944 (+)
G329413 NA non-coding upstream 390895 3533229 ~ 3543026 (+)
G329381 NA non-coding upstream 545470 3388250 ~ 3388451 (+)
G329380 NA non-coding upstream 546551 3387157 ~ 3387370 (+)
G329512 NA non-coding downstream 34408 3972116 ~ 3973883 (+)
G330383 NA non-coding downstream 166530 4104238 ~ 4104501 (+)
G330402 NA non-coding downstream 210811 4148519 ~ 4148864 (+)
G330404 NA non-coding downstream 212279 4149987 ~ 4150244 (+)
G330396 NA non-coding downstream 217691 4155399 ~ 4157165 (+)
G329194 NA other upstream 1002032 2920254 ~ 2931889 (+)
G329125 NA other upstream 1315770 2617704 ~ 2618151 (+)
G328456 NA other upstream 2700803 1232022 ~ 1233118 (+)
CI01000112_05076817_05101845 NA other downstream 1147012 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020551 zmp:0000000735 coding NC_007133.7 CM002906.2 31023205 ~ 31032725 (+)