G329512


Basic Information

Item Value
gene id G329512
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3972116 ~ 3973883 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU374549
CCGAGGAGGCGTTGTCCCACATTAGAACGTCACCTTCATTTAACGCAGAAGCCGGCTATCCTGGAAAAAGGACAGAGGTTTCCCGGTCCTGTGACACACATTGAATAACCAATATAGAGGATTATCAGTGTTTTGACTTTGATTTGTGCTGAAGTGCTTGCGAAAAGGGCTTTATAAAATGATGAAGAACGGGCATCATGTGATCAGTGCTCCGTCCGCCGCCGCAGCCTGCAGTCCGGAGAAGAGGAGGCGCACTGTCCGCGTCTGGTGCGATGGATGAATGTTTGGGATGCCAGAATATTAGACAGTGGAATGAACTACCAATGAGAGGCAGTGTAAACACAGAGCGCTCAGTGACCCCCCTCAATCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU374549 True 371 lncRNA 0.50 2 3972116 3973883

Neighbor

gene id symbol gene type direction distance location
CI01000112_03956622_03957718 MAFGA, MAFGB, MAFG coding upstream 14249 3956622 ~ 3957867 (+)
CI01000112_03933921_03937412 NA coding upstream 34408 3933921 ~ 3937708 (+)
CI01000112_03932803_03933881 NA coding upstream 38204 3932803 ~ 3933912 (+)
CI01000112_03896750_03921778 ERN1 coding upstream 48952 3896750 ~ 3923164 (+)
CI01000112_03861399_03879738 TEX2 coding upstream 92364 3861399 ~ 3879752 (+)
CI01000112_03978196_03991078 PCYT2, PCY2 coding downstream 4313 3978196 ~ 3991078 (+)
CI01000112_04004799_04012301 NA coding downstream 30692 4004575 ~ 4012680 (+)
CI01000112_04020422_04027554 NA coding downstream 46401 4020284 ~ 4027746 (+)
CI01000112_04033996_04035285 NA coding downstream 60010 4033893 ~ 4035337 (+)
CI01000112_04036511_04048219 NA coding downstream 62628 4036511 ~ 4048332 (+)
G329513 NA non-coding upstream 45940 3859478 ~ 3926176 (+)
G329517 NA non-coding upstream 89172 3811534 ~ 3882944 (+)
G329413 NA non-coding upstream 429090 3533229 ~ 3543026 (+)
G329381 NA non-coding upstream 583665 3388250 ~ 3388451 (+)
G329380 NA non-coding upstream 584746 3387157 ~ 3387370 (+)
G330383 NA non-coding downstream 130355 4104238 ~ 4104501 (+)
G330402 NA non-coding downstream 174636 4148519 ~ 4148864 (+)
G330404 NA non-coding downstream 176104 4149987 ~ 4150244 (+)
G330396 NA non-coding downstream 181516 4155399 ~ 4157165 (+)
G330433 NA non-coding downstream 220783 4194666 ~ 4194913 (+)
G329194 NA other upstream 1040227 2920254 ~ 2931889 (+)
G329125 NA other upstream 1353965 2617704 ~ 2618151 (+)
G328456 NA other upstream 2738998 1232022 ~ 1233118 (+)
CI01000112_05076817_05101845 NA other downstream 1110837 5076817 ~ 5101845 (+)

Expression


Co-expression Network