G345064


Basic Information

Item Value
gene id G345064
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000133
NCBI id null
chromosome length 2254871
location 466540 ~ 506249 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU392801
GTTTGGTTAAGAGGAAGCATGGCCGGCTTCTCATGCAGTCTTCCATGCAGTAGAGTCCAGATTGAGAAACATGTGTTTCAAGCTCAATCAATAAGGACTCTTTTATATTGGTAGTTTAATACTACTAATATGTGCACTAAGTGGATGTGAGAAGCATTGCCTCATGGAGACTACTACATCGAATCCCTTAGTGAATTGTTTGGGATTCGGATAGGGATTGTTCACTCGAGGACTAAAGTGGTTGTTTGGGAGCACATGGTGGATGGTTATCGTGTTGGACTAGAGTTTGACGCTCACTAAACTATAAATCAACCTTGTTTATACAAATTTCTAAGTCTGCTGATTTATTTTGCTTTATTTTGCATTGTCTGTTGTTGTTTTTTTTTTGTTTTTGTGCCAGTTCTTCAATAAA
>TU392802
GTTTGGTTAAGAGGAAGCATGGCCGGCTTCTCATGCAGTCTTCCATGCAGTAGAGTCCAGATTGAGAAACATGTGTTTCAAGCTCAATCAATAAGGACTCTTTTATATTGGTAGTTTAATACTACTAATATGTGCACTAAGTGGATGTGAGAAGCATTGCCTCATGGAGACTACTACATCGAATCCCTTAGTGAATTGTTTGGGATTCGGATAGGGATTGTTCACTCGAGGACTAAAGTGGTTGTTTGGGAGCACATGGTGGATGGTTATCGTGTTGGACTAGAGTTTGACGCTCACTAAACTATAAATCAACCTTGTTTATACAAATTTCTAAGTCTGCTGATTTATTTTGCTTTATTTTGCATTGTCTGTTGTTGTTTTTTTTTTTGTTTTTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU392801 False 412 lncRNA 0.38 2 466540 467090
TU392802 True 397 lncRNA 0.38 3 466540 506249

Neighbor

gene id symbol gene type direction distance location
CI01000133_00297340_00299091 NA coding upstream 167449 295279 ~ 299091 (+)
CI01000133_00246519_00248635 NA coding upstream 217843 246519 ~ 248697 (+)
CI01000133_00229073_00230889 NA coding upstream 235418 229073 ~ 231122 (+)
CI01000133_00106756_00108024 KCNJ12B coding upstream 358095 106756 ~ 108445 (+)
CI01000133_00023486_00027675 ST8SIA6 coding upstream 438662 23486 ~ 27878 (+)
CI01000133_00868719_00901792 CERK coding downstream 362470 868719 ~ 901827 (+)
CI01000133_01165182_01171198 SRR coding downstream 658933 1165182 ~ 1171461 (+)
CI01000133_01184002_01190221 TMEM19 coding downstream 677753 1184002 ~ 1190774 (+)
CI01000133_01200867_01215885 NA coding downstream 694618 1200867 ~ 1215901 (+)
CI01000133_01228997_01243085 SLC37A3 coding downstream 722748 1228997 ~ 1243208 (+)
G344991 NA non-coding upstream 315026 151314 ~ 151514 (+)
G344979 NA non-coding upstream 343689 122309 ~ 122851 (+)
G344978 NA non-coding upstream 349049 116675 ~ 117491 (+)
G344975 NA non-coding upstream 369052 97146 ~ 97488 (+)
G344973 NA non-coding upstream 370254 96059 ~ 96286 (+)
G345246 NA non-coding downstream 72815 579064 ~ 579286 (+)
G345254 NA non-coding downstream 80041 586290 ~ 586501 (+)
G345267 NA non-coding downstream 124302 630551 ~ 630785 (+)
G345284 NA non-coding downstream 145355 651604 ~ 651898 (+)
G345295 NA non-coding downstream 170873 677122 ~ 677328 (+)
G344985 NA other upstream 319359 142772 ~ 147181 (+)
G346486 NA other downstream 1735604 2241853 ~ 2243321 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G32840 NA non-coding NC_047596.1 CM018542.1 24482663 ~ 24482990 (-)