CI01000158_00199362_00223636 (BMP1B, BMP1A, BMP1)


Basic Information

Item Value
gene id CI01000158_00199362_00223636
gene name BMP1B, BMP1A, BMP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 198857 ~ 223636 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000158_00199362_00223636.mRNA
CAAACAGATCCTCATCTAACAGCAGTGCAAAGGACGACCCAGTTTTGGTCAATCGAATCTTCCTACGCAGAAGGAGAGCAGCCACAGCCAGACCTGAGAGAGTTTGGCCTGATGGCATAATACCCTATATTATTAGTGGCAACTTTAGTGGCAGCCAGCGAGCCATTTTCAAGCAAGCCATGCGTCACTGGGAGAAACACACTTGCGTGACCTTCATGGAAAGAAGCACGGAGGAGAGCTACATCGTCTTTACCATCCGGCCATGTGGTTCCCAGAAGAGTAGGCCATGTGCCACCTGTGACCAAAAACATCCTTGCTTTGGATTCAGTCAGTACAAAGCTCCAATTTCTCAGCAGAGACAGATCCTGACCTCAAGGTGCTGCTCATTTGTCGGGCGGAGGGGTGGTGGTCCACAGGCCATATCTATCGGGAAGAACTGTGACAAGTTTGGCATCGTGGTGCATGAACTCGGACATGTCATTGGATTCTGGCACGAGCACACCCGACCCGACCGGGACGAACATGTTGATATATTTCGAGAAAACATCCAGCCAGGTCAGGAGTACAATTTCATAAAGATGGAGCCAGATGATGTGGATTCGCTTGGGGAGGTTTACGATTTTGACAGTATCATGCATTATGCCAGAAACACCTTTTCCAGGGGCATCTATCTTGATACCATGCTGCCAAGATATGAGGTTGATGGAGTCCGACCTCCCATCGGACAGCGGACGAGACTGAGCAAAGGGGACATCGCTCAAGCAAGAAAATTATACAAGTGTCCAAGAGCTCCTCGCAAGATTTCTGATCAGGGAGTCAGAAGGTTAGTCAGAAGAGTAGCCCAAGAGCCAAGGACCACTCGGAAAGAAGTCCAGAAAGACTTGGAGGCAGCAGGATGTGGTGAGAGCCTTCAGGACAGCACTGGAAACTTCTCCTCCCCTGGGTTCCCTAACGGATACGCCGCATATCTTCACTGTATATGGAGGATATCGGTCACGCCTGGAGAAAAGATCATTCTTAATTTTACCTCAATGGATCTGTACAGAAGTCACTTGTGCTGGTACGACCATGTGGAGATCCGTGATGGATACTGGAGAGATGCACCTTTGAAAGGCCGTTTTTGTGGAGACCAGCTACCCGAGGCCATCGTCTCCACTGACAGTCGACTGTGGATTGAATTCCGCAGCAGCAGTAATTGGGTGGGGAAAGGCTTCTCTGCTGTTTATGAAGCTATTTGTGGAGGTGAAGTGAGAAGAGATAGTGGACAGATCGAGTCACCCAATTACCCTGACGACTATCGCCCTAATAAAGTTTGCACATGGAAGATCATCGTACCCCAGGGGTTTCATGTGGGCCTCATCTTCCAGTCGTTTGAGATTGAAAAACATGACAACTGTGCTTATGACTACCTGGAAGTGCGAGATGGCGATTCTGAGAGCAGTCCTCTACTGGGCCATTTCTGCGGCTACGAAAAGCCAGACGATGTCAAGAGCAGCTCCAACCAGCTGTGGATGAAGTTTGTATCTGACGGCTCTGTGAACAAAGCTGGGTTTGCAGCTAATTTCTTTAAAGAGATTGATGAATGCTCCAGGCCTGATAACGGTCACTGTGAGCAGCGCTGTATCAACACCCTGGGCAGCTACCACTGCGCCTGCGACCCTGGTTACGAGCTTGCCCCGGACCGCCGCAGCTGCGCAGCAGCTGCCTGTGGAGGATTCATCTCCAAACTCAACGGCTCCTTTACTAGTCCAGGATGGCCGCAGGAATACCCGCCCAACAAGAACTGCGTGTGGCAGCTCATTGCACCCGTGCAGTACCGCATCACACTGCTTTTTGATACTTTTGAGATCGAGGGGAACGATGTTTGTAAATATGATTATGTTGAGGTACACAGTGGTTTGTCCACTGACACAAAGCTTCATGGGAAGTTCTGTGGCACAGAGAAACCAGAGGCGATCACGTCCCAGCTCAACAGTATGCGTGTTGAGTTCAAATCAGACAACACTGTGTCCAAGAGAGGCTTCAAAGCTCAGTTCTTTTCTGACATGGATGAGTGTTCTAGGGAGAATGGAGGTTGCCAGCATGAGTGTGTTAACACGTTTGGGAGCTACAGCTGTCAGTGTCGCAGCGGCTTTGTGTTGCACACCAATAAACATGACTGCAAAGAAGTGGGCTGTGATCAAGCCATTACCAGTGTGTCCGGTATCATCACAAGTCCAAACTGGCCGGATAAATACCCCAGCAAGAAGGCCTGCACATGGACCCTATCCACGACCCCAGGGCATCGCATTAAACTGGCTTTTGAAGAGATTGACATGGAGGCTCATCAGGAGTGTACATACGACCACTTGGAGATATATGACGGCCAAAATGGCAAAGCGACCAGTTTCGGACGCTTTTGTGGGAGCAAAAAGCCATCGCCGGTTATTTCCAGTGGTAACACTATGTTCCTGCGGTTCTTCTCGGATAACTCGGTACAGAAAAGGGGTTTTAAGGCCTCTCATTCAGCAGAGTGCGGCGGTAGTCTGAAGGCAGAGATTAAGACCAAGGATCTATATTCCCACGCTCAGTTTGGTGATAACAACTATCCCGGAGCTTCAGACTGCCAATGGGTGATCTCAGCGGAAAAGGGCTATGGGGTGGAGCTCATCTTCCACACATTTGAGATTGAGGAGGAAGCTGATTGCGGCTATGATTACGTGGAGCTGTTTGATGGCGCTGATGTCAAAGCGCCCAGGCTGGGACGCTACTGTGGGTCTGGGCCACCAGAGGAGATCTACTCAGCTGGTGATGCCATTGTCATCAAGTTTCACTCGGACGACACCATCAACAAGAAAGGTTTCCATGTTCGGTACACAAGCACCAAGTTCCAGGACACCCTGCACACTAACTGCAAAGAGGAAGTCATCATGGTGCCAAACACATATGTAGCCTTTCAGCTATAAAAAGCAGAGAGGACAAGCTTGATGTAGGGATATGGCAACAATTTTTGCCCTGTCGTACTTCAAAGGATCCATTGAAAACTCCATAGGAAATGGAACATCAGACTGGTAGATATCAGTATGAAGAGCTTTGTTGATTTCAAGTCAAGGAGGAAGGATGAATTGGATTCAAAATTTCCCCGATACACTTTTTTTCTCCCAGAGATCTCTTTCATTGTCCTAAGGCTAGCATCTAAAATACTTTTAGATGATTGTTTTATTATAAAAATAAAAATAAAATCATAATTCTTTATTGCCACACATCTAGGTCGGTGATAATTGAGTTTGGAAATGTATAAAATATCATTCAGTGATAATTATGAGGATTATATTTTTTTTGTAAAAAGCAATTCTAGCACTATTCCTTACATGAGAGTTGTACATGATTATTCAGACTGCTAGACTTAGAATTATATTAGTAGAAATAGATCTGGCACAACTTACCCACTCACAAGGTGCATGGAATAAA

Function

symbol description
bmp1a Enables peptidase activity. Acts upstream of or within several processes, including collagen biosynthetic process; determination of ventral identity; and protein phosphopantetheinylation. Is expressed in several structures, including alar plate midbrain region; central nervous system; mesenchyme median fin fold; mesoderm; and optic vesicle. Used to study osteogenesis imperfecta and osteogenesis imperfecta type 13. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 13. Orthologous to human BMP1 (bone morphogenetic protein 1).
bmp1b Predicted to enable calcium ion binding activity; metalloendopeptidase activity; and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Is expressed in margin. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 13. Orthologous to human BMP1 (bone morphogenetic protein 1).
bmp1 Enables identical protein binding activity and peptidase activity. Involved in proteolysis. Acts upstream of or within positive regulation of cartilage development. Predicted to be located in extracellular region. Implicated in osteogenesis imperfecta type 13.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K05502 BMP1, TLD; bone morphogenetic protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000158_00199362_00223636.mRNA True 3450 mRNA 0.47 21 198857 223636

Neighbor

gene id symbol gene type direction distance location
CI01000158_00184403_00186141 PCNA, MGC53867, PCNA.L coding downstream 11594 183997 ~ 187263 (-)
CI01000158_00176124_00177494 NA coding downstream 21079 174256 ~ 177778 (-)
CI01000158_00161749_00163076 NA coding downstream 35699 160987 ~ 163158 (-)
CI01000158_00129735_00137154 NA coding downstream 61646 129182 ~ 137211 (-)
CI01000158_00113468_00114478 NA coding downstream 84352 112991 ~ 114505 (-)
CI01000158_00234248_00237084 NPFFR1L1 coding upstream 10141 233777 ~ 237084 (-)
CI01000158_00286848_00307666 NA coding upstream 62909 286545 ~ 307666 (-)
CI01000158_00372066_00382393 NA coding upstream 148309 371945 ~ 382393 (-)
CI01000158_00387142_00400130 RAB11FIP1B coding upstream 163506 387142 ~ 400130 (-)
CI01000158_00409330_00422508 GPAT4, PLCF coding upstream 185497 409133 ~ 422627 (-)
G363106 NA non-coding downstream 93657 104902 ~ 105200 (-)
G363101 NA non-coding downstream 99640 98255 ~ 99217 (-)
G363094 NA non-coding downstream 116763 81849 ~ 82094 (-)
G363084 NA non-coding downstream 135558 63070 ~ 63299 (-)
G363076 NA non-coding downstream 144688 53936 ~ 54169 (-)
G363807 NA non-coding upstream 22113 245749 ~ 246055 (-)
G363766 NA non-coding upstream 48449 272085 ~ 275673 (-)
G363771 NA non-coding upstream 67993 291629 ~ 292184 (-)
G363818 NA non-coding upstream 93152 316788 ~ 317127 (-)
CI01000158_00717478_00721819 STAMBPA, STAMBP other upstream 496410 717291 ~ 722084 (-)
G364103 NA other upstream 1232498 1452257 ~ 1501547 (-)
G364203 NA other upstream 1464330 1687966 ~ 1688828 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020968 LOC106579847,LOC108236587,LOC105014870 coding CM030127.1 CM030127.1 38953485 ~ 38972284 (+)