Gene
RNA
| Item | Value |
|---|---|
| gene id | G363831 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000158 |
| NCBI id | null |
| chromosome length | 1938735 |
| location | 361333 ~ 361593 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU414986 | True | 261 | lncRNA | 0.50 | 1 | 361333 | 361593 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000158_00286848_00307666 | NA | coding | downstream | 53667 | 286545 ~ 307666 (-) |
| CI01000158_00234248_00237084 | NPFFR1L1 | coding | downstream | 124249 | 233777 ~ 237084 (-) |
| CI01000158_00199362_00223636 | BMP1B, BMP1A, BMP1 | coding | downstream | 137697 | 198857 ~ 223636 (-) |
| CI01000158_00184403_00186141 | PCNA, MGC53867, PCNA.L | coding | downstream | 174070 | 183997 ~ 187263 (-) |
| CI01000158_00176124_00177494 | NA | coding | downstream | 183555 | 174256 ~ 177778 (-) |
| CI01000158_00372066_00382393 | NA | coding | upstream | 10352 | 371945 ~ 382393 (-) |
| CI01000158_00387142_00400130 | RAB11FIP1B | coding | upstream | 25549 | 387142 ~ 400130 (-) |
| CI01000158_00409330_00422508 | GPAT4, PLCF | coding | upstream | 47540 | 409133 ~ 422627 (-) |
| CI01000158_00430123_00437063 | CABP1 | coding | upstream | 68438 | 430031 ~ 437063 (-) |
| CI01000158_00453940_00462329 | NA | coding | upstream | 91851 | 453444 ~ 462409 (-) |
| G363829 | NA | non-coding | downstream | 6037 | 355042 ~ 355296 (-) |
| G363819 | NA | non-coding | downstream | 30806 | 330313 ~ 330527 (-) |
| G363818 | NA | non-coding | downstream | 44206 | 316788 ~ 317127 (-) |
| G363771 | NA | non-coding | downstream | 69149 | 291629 ~ 292184 (-) |
| G363832 | NA | non-coding | upstream | 7784 | 369377 ~ 370365 (-) |
| G363844 | NA | non-coding | upstream | 118368 | 479961 ~ 480422 (-) |
| G363775 | NA | non-coding | upstream | 154594 | 516187 ~ 516652 (-) |
| G363858 | NA | non-coding | upstream | 157093 | 518686 ~ 519093 (-) |
| G363877 | NA | non-coding | upstream | 214598 | 576191 ~ 576390 (-) |
| CI01000158_00717478_00721819 | STAMBPA, STAMBP | other | upstream | 358453 | 717291 ~ 722084 (-) |
| G364103 | NA | other | upstream | 1094541 | 1452257 ~ 1501547 (-) |
| G364203 | NA | other | upstream | 1326373 | 1687966 ~ 1688828 (-) |
