CI01000161_01072131_01081719


Basic Information

Item Value
gene id CI01000161_01072131_01081719
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000161
NCBI id null
chromosome length 3087367
location 1072094 ~ 1081836 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000161_01072131_01081719.mRNA
GCATATAAACACTCATAAACCTGTTTCAGTTCAAAAAATGACAGGAGATATGCTTGGTGGTGTGAGGGGCCAATCCTTCTACCTGCATGATGTGAAGAGACACCAGTCTGCCACACTCACTGATATCATCATCCGTCTGGGAGGGAAAGTAGACAGTTTCCTCACTAAGGATGTGAACGTGGTCGTGACGGGCACTAAAGAAGCTCATAGTGATTTGCTGGTGAATAGTTCATGTACTGCAGGGGGGAAACAATCTGGAACCCCCAAACCTCTGGTTTGTGGCAGTCGTGGAAGAGCGTTACTGGAAAAAGCCATCCACAGCAATGAGAAGTATCAGAACAGTGTGCTGGCTAATGCTCGCTCATGGGGAGTCAAGGTCTACAATGTAGATGCTGGAGCCTTGAGGGGTCCTTATTTGAAAGTGGAAGACTTCAGTCGGAAGTTCAGACCATACTATGCACAGACTCTGAGTTTCCCGATGATGAGTTACTCAGGAAAATATAGCCCTTTTGAGCTTCTCATTCCTCGGCAGGCTGGTAGAAGCAAGGATGAAGATCCCAGCAAAGACAATTTCAGGAAGAAGGAAGAACCCACTAGCAGCTGCCATAAGTTGCTGGTGCCACTTACAGCAAGTGCCACACCCAAAGGCCCAACTAAGAAAAGTTCAGGCTATTGTGAATGCTGCCACATGCCCTACAAAGACCAGTACGAGCACTTGGAATCTGAGATGCATCGTTCTTTCATTCAAAATGACAGTAACTATGCTGTAGTGGACCAACTAACGGCTGGCATGCATGCTAGTTTTATTTGTAATCAAAAAGTGGATCCAACGCTAATCAAGTCATCAGCAGACGTCCCTCCGTTACATTTGAATCATTTAACTGAGATGGTTCAGAATACTGTCAGTGAAGATGAAAAATCTCTGCAGACTCCACTAGTTGAAGACTGTGGTCATCTACTTCCAATTACTGACATGTTTTCTTCAGCTTTAGACAACAAAGAAAACTTTCCTGATCCTAACCACGGTCCATCTGGTCAGCGAAATGTGACCTCACATCTTGATACAATTCAAAATATCTGCCCTGATCCTCTTGACAATGACAAATTAGGCCTATACATCTGCTGCACCACAAAGGTTCAAGACTTTCAATCTGGTGTTCTCTGCATGGATATAGTTCCACATCACATTTTCTCAAAATCCCAGTCAATAGAGAAGAAACTCAAAAGCCTCTCCTCTGTCACACCCTCAGAAACTCAATCCAAAATGCTCACCCTAAGCTCCCCCAGAGATGACAAAATCCCATGTACCATGTCTGGTGATGAATATGTCCCTGAAACTCAGGATCGATGTGAAAGGGGTAATGGTCGACTTGTATTGCATAATCCAGAGAGCCTTACAGTTGTTGTTTCTAACACAGTCTGCTCTCAAAATCAAAACCAGAATTGGGACCAAGGTTCAAAAATGTGGTCAAACAGCCCTAAAATGCAGCTTCACGGAAGGGAAGATTGTAATTCTGAAAGTTGTGGCCAGTCTGTGATGGACAGTAGAAAGTTATCTTCAACAAAACAATCACTAAAATTGGCCCAAGATATTGTTGGTTCTCCAGAGTTTGGCATCTCTTACTTTTCATTACCTCATTTACTACCATTTCCACATTTGTCAGATTACCCTTTTTCTATAGTTAACTTAAAAAAGCGCTGTAGGTCCTTCACTCCAAGTCCAAAACTTGCCAAGAGAAGAAAGATTAGTCAAAGCGAAAAGCCAAAGCTATCCTGGGATTGCAGACAGTACTCTTCTGTACTTTCCACCATGTCATGTTTACCAATCTCCAAGGTGGTTTTTGCGACAAAGATGAATAATCGAACTGGAGGTGCCTTACTAGAAACCCACGAATCATCACTGAAAGAATCATCTTTTGCGAATCAGATCCCAACGCAGCCTTCCCTAAAATATTTTACTCCTCCCAATACCCACTATTTGCCTCAAGTTGACCAACAGGACAATGACGGAAGTCAACCTTGTGTCCATGTTGAGCAATCGTATGAATTGTTTCCAATCAAAGATCCGGTGGAATCCAGAGTAACCACTTACTCATCTGATTTGGACCCCCCTCAGTTGGTTCCATTTTTCCATGAAGACCATCGGCTCCAGCACCATCAATATCATGATCCTCCAGAATTGTTTCCCGAAGATACCTCCCATACATCAGTCAGTAAAGCCTCAAACAGCTCATTCCTGTCACACTCCGCAACCTCCGTTTGCATTGAATCTGCTCTCCTCCCTAACCTCACGTGGTCCACGGCATCTTCAGAGTCAGATTGGGACTCTGGACTCTTGTCGTGGCTTGCGACTGCAGTTCCTCTTCAGGCTAAAAGGGGTCATGATGACCTGGGTCTGTTACTACAAAAACCACACACTGACATGCAGGATGGGAGCTATACATCACGGTTGTGCTCCATACTGCAACCCTCTTGATTCACAATTTTGGGAATGATGTTGCACCAATACACGCAATAGGACAATTGAGACTGTTGATGAATTCAATCCTAAAGCAGTCGTTTCTCAGTAGTCCTCATTTTTTCACTACTACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000161_01072131_01081719.mRNA True 2593 mRNA 0.44 9 1072094 1081836

Neighbor

gene id symbol gene type direction distance location
CI01000161_01044665_01050371 KLHL11 coding upstream 20993 1044665 ~ 1051101 (+)
CI01000161_01012565_01040932 ACLYB, ACLY, ACLYA coding upstream 31162 1012565 ~ 1040932 (+)
CI01000161_00949785_00955153 NA coding upstream 116865 947517 ~ 955229 (+)
CI01000161_00876668_00908543 AVL9 coding upstream 163132 876408 ~ 908962 (+)
CI01000161_00844727_00861103 SULT1ST6 coding upstream 210991 844727 ~ 861103 (+)
CI01000161_01084125_01132855 NA coding downstream 2289 1084125 ~ 1133007 (+)
CI01000161_01187108_01189802 FOXH1 coding downstream 103618 1185454 ~ 1189865 (+)
CI01000161_01236311_01253636 STAT5B, STAT5A, STA5B, STAT5 coding downstream 154475 1236311 ~ 1253946 (+)
CI01000161_01260410_01265135 NA coding downstream 178574 1260410 ~ 1265421 (+)
CI01000161_01272798_01288327 NA coding downstream 190962 1272798 ~ 1289008 (+)
G366443 NA non-coding upstream 27994 1043849 ~ 1044100 (+)
G366442 NA non-coding upstream 72275 999600 ~ 999819 (+)
G366437 NA non-coding upstream 78377 993201 ~ 993717 (+)
G366350 NA non-coding upstream 397296 674595 ~ 674798 (+)
G366251 NA non-coding upstream 465854 605885 ~ 606240 (+)
G366469 NA non-coding downstream 80561 1162397 ~ 1162979 (+)
G366468 NA non-coding downstream 83571 1165407 ~ 1167713 (+)
G366471 NA non-coding downstream 85932 1167768 ~ 1167971 (+)
G366467 NA non-coding downstream 87122 1168958 ~ 1169432 (+)
G366474 NA non-coding downstream 90677 1172513 ~ 1172720 (+)
G366441 NA other upstream 73872 997902 ~ 998222 (+)
CI01000161_01387036_01388147 LSM5 other downstream 305176 1387012 ~ 1388622 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005234 dbf4b coding NC_007123.7 CM002896.2 13888670 ~ 13905307 (-)