XLOC_005234 (dbf4b)


Basic Information

Item Value
gene id XLOC_005234
gene name dbf4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13888670 ~ 13905307 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010081
gcgctatagaaataaagatggatAGAATTGTAACGTTACTAGTGAAATTATTGCAGGGGCACTACATGTCAGTGGGTGGCGGTAATGTGTAACGTTGCTCGCAACAGCAGAAAGAAAGGAAGGGAAGAAGACATTCAGGAGggctgtttgaaaaaaataacagAAGCTTACTGCGTGAGGTGTTACTATCGCATGAAAACAACAAATTTGAAGATGTTTTGAAataccaaaaaagccttttaaaatTCTTTATGAGCAAAGCACATTAAGTTTCAGTTAAAATAATGTCTGGAAATGTGTCTAATGGTTTGAGAGGCAAATCCTTCTACCTGCATGATGTAAAGAGACATCAGTCTGTCACACTTACTGACATCATCAACCGTCTGGGAGGGAAGGTGGACAGTTTCCTCACTAAGGATGTGAATGTGGTTGTGACAGGCATTAAAGAAGCTCATAATGATTTGCCTGTGGATAGTTCATGTGCTACAGGGAGAAAACAATCTGGAACTTCCAAACCTCTGGTTTGTGGCAGTCGTGGAAAAGCGTTACTGGAAAAAGCCATCCACAGCAATgacAAGAGTCAGAGCAGTGTGCTGGCTAATGCTCGCTCATTGGGAGTCAAGGTCTACCATGTAGATGGTTTTCTCAAGATTATCAGCCATCTCGATCAGAAAATGAGAACAGCCAAGaaaaaaagaagcaaacaAATAGCTCCTCAAGTGAAAGCTGGTGTTTTGAAGAGTCCTTATCTGAAAGTGGAAGACTGCAGTCGGAAATTTAGACCATACTACGCACAGACTCTAAATTTTCCATCAATGAGTTACTCTGGAAAATGTAGCCCATTTGAGCTCCTCAGAATTCCTCAGAAGACTGATAGAAGCAAGGATGAAAATCCAAGCAAGGATCATTTTGGGAAGAAGAAAGAACCCACTAGCAGCTGCCATAGGTTACAGGTGCCACTAACAGCAAGCGCCACACTTAGAGGCCCAACAAAGAAAAGTTCAGGCTATTGTGAGTGCTGCCACGTAGCCTTCAAGGACCAGCATGAGCACTTGGAATCCGAGATGCATCGTTCTTTTGTTCAAAAGGACAGTAACTATACTGAGGTGGACCAACTAACCGCTACCATGAATGCTAACTTTGTTTGTATTCCAAATGAAGAAGTGGATCCAACTTTAATGAAGTCATCTGCAGGACTTTCACCATTACATTTGAACCATCTAACTGAGATGGTGCAAAATACTGTCAGTGACAATGAAGAATTCTTGCAGACTCCACTGGTTCGAGATTGTGGTCATCTACCATCAATTACTGAACTATTTACTCCAACTTTAGACAAAACAGAAAACTCTCCTAAGCCTATCCAGAGCCTATCTAGTTTTTCAACCCATCATCAAAACACAACCTCACATCTTTATCCAATGCAAAATAACTGTCCTGATGCTTTTGACCATGACAAAGCAGGTGTTTACTTCACCTGCACCACAAAGGTCAATGAATTTCAGCCTGATGTTCTATGCATGGATCTGATCCAACATAGCGTGTCTTCTATAGATAAGAATCCCAAGAGCTTCTCTTCTCTCACATCCTCAGAAGCTAAGTTAAACATGCTCACCCTGTGCTCCAAAATTCCATGTACCACTTCTGGTGGAGAATATGACCCTGAAAATCAGAATCAGTCTGAAGTTGCTCATGGCCACCTTGTATGTCATATGCCAAGGAATCTTGAAGGTGCTTGTTCCAACACAGTCTTTTCTCAAAAACTGGTTTGGAATCAAGGTTTAAGTATGTGCTTAAACAGCCCTAAAATACTACTCCAAGGAGAGAAAGATGGCAATTTGCAAAGATGTGGACAGTTTGAGTTTGATCACAGATTGTTACTTTCAACAAAAAAATACCTGCAAGGCATTGTTAGATCTCCAGAATTTGGCATGACTTACTTTCCGTTATCCTGTTTTCTACCATTTCCACACTTGTCGGATTCTCCCTTCCCCAAAGTTAACAAAAAGAAACGTGACAGGTCCTTTACTCAAAGTCCAAAACTTGCCAAAAGAAGAAAAATTTGCCACAATGGAATGCAAAACCCATCATGGGACTGCAGTACTCCCTGTAAAAGATCATCTGTACCTTCCGCCTTGGCATTGGCAGTCTCCAAGGTTGATTTTACAACAAAGATGAATAATAGACCTGGAGATGAAATCTCCTTTGCAGATCAAACTCAAACATGGCATTCCCGGAAGAAGTATTTTACTTCTCCCAGTACCCACTGTTTGCCTAATCAGGTCGGCCAACAGGACAATGCTACTAGTAAACTTGGTGACCATGTTGAGCGGAAGATATTTCCAGAAGATCCAGTGGAATCCAGAGTAACCACTCACTCATCTGAATTGGATCTTCCTCAACTAGTTCCATTTTACTATGAAGATAATAAGCTCCAGCGCCATCAATATAATGATCCTCCGGAACTGTTTCCGTTTTTTTTCCAGACACCAGAAGATAACTCTCAGGCATCAGTCAGTAAAGTCGCAAGCAGCTCATTTGTGGCACACTCCGGAGCCTCTGTTTGCATTGAATCTGCTCTTGTTCCTAACCTCACGTGGTCCCCGGCTTCTTCAGAGTCAGATTGGGACTCTGGCCTCTTGTCATGGCTTGCGAATGCAGTTCCACTTCAGGCAAAATCTGACAAAGATGACATGGGTCTGTTATTACAAAAACCACACACTGACATGCAGGATGGAAGCTACGCATCACGGTTGTGCTCCATACTGCAACCATCTTGATTCAGGTTTTTGGCACTGATGTTTCTCTAATCCACAATAGGATGATTGCAACTATTGATGAATTCAGTCTGCTCCTATTTCTCCTCATTTGTTCtagttttttacttgtttcttctACAATTAAATTAAGGTTATTACTGGTATTACTTGAGAATGAAGACTTATTAATTGAATTGTTGTAAAGTTTTGTGGTTTTCATGTAGTACATTTATTTATAGAAGTTGGCCTCTGTATGCTTCTTTGCAACCAATGTGTAAATAATCTTTTTTGCATAGGTTTTATTTAGTGAAGactactctatttttttttttctggataaagAATCAGTGTACTAAACATTCCCTTCCACAGTGTTATTTTCtagtttgtcaaaattaagtaaatataGTGTTAATAACTGTTGGAAAGCATCCCATCTTCGATTGACCTTCatcctattattattttttttaatgtccttTTTTTTCACTCTCTATCGCCCTATTTGTTGACCATGACTTTATAACAGCAATATCCGGAAACATGTGCTGGTATTGAGAATTTAATGAGGCTTTGCTGGAGGGGCATCATCCAATTAGTTTAAGTGCTGTGTCTGGCCTATCTCCAGTTTAGAGGCAGTGCTGATGGAAGAACAATGCTGTGGTGGTTTTGGAGAACTTGCAGGATGTGAAGACAGAAATGTCCTATGACTTCTAAAGGTCTTTTGAGTTGCTGTGAGATCCCATTTAAAGATTTTTTGGATTGCATGCAAAGGTTGTAATTTTATGACCTCTGTTGTTCAGTTGTCAGTTTTGATGATGTGAATTCAGTCAATGTTTTTTGGCAACTTCTGTGACATTTCTGTTAAAGACATTCTAATTAGAGTACGTCAAGCATATGCCATTGATGTATCGTGATGGTGAATCATGTGATTGTTTTAGTATTTGTGCAGTTTGTATATTAAAAGTTATTTCATTCAAAATGTTAATTAGCAGCATTGAATTGCATGGATTTTTATCACAATGAGATAAAATGATACACTTCGGTGCAAAATTACATAAACTTTGAATTATTCATTGTAGTTGTCcccaaacatttcttattatgtATATTCACTCTCAGGTTGATCTTTCGTTTGTTCAttgcatctttatttttatatgtatgttaGGTTGAAACAATTTCAGGTCAGCTTtgaaattttattaatatatttgggTTAAAGATAAAGTAGTTTTCAAACCTCTTAATAAAAACTCTTTTAATTATT

Function

symbol description
dbf4b Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in positive regulation of nuclear cell cycle DNA replication and regulation of cell cycle phase transition. Predicted to be part of Dbf4-dependent protein kinase complex. Predicted to be active in nucleus. Orthologous to human DBF4B (DBF4 zinc finger B).

GO:

id name namespace
GO:0010571 positive regulation of nuclear cell cycle DNA replication biological_process
GO:1901987 regulation of cell cycle phase transition biological_process
GO:0005634 nucleus cellular_component
GO:0031431 Dbf4-dependent protein kinase complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043539 protein serine/threonine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-269 Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in positive regulation of nuclear cell cycle DNA replication and regulation of cell cycle phase transition. Predicted to be part of Dbf4-dependent protein kinase complex. Predicted to be active in nucleus. Orthologous to human DBF4B (DBF4 zinc finger B).

Ensembl:

ensembl_id ENSDARG00000086550

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010081 True 4029 mRNA 0.39 12 13888670 13905307

Neighbor

gene id symbol gene type direction distance location
XLOC_005233 adam11 coding downstream 1718 13811631 ~ 13886952 (-)
XLOC_005232 foxh1 coding downstream 158169 13722385 ~ 13730501 (-)
XLOC_005231 stat5b coding downstream 238198 13560082 ~ 13650472 (-)
XLOC_005230 CR354395.2 coding downstream 332134 13553730 ~ 13556536 (-)
XLOC_005229 ghdc coding downstream 339132 13527422 ~ 13549538 (-)
XLOC_005235 klhl11 coding upstream 55961 13961268 ~ 13966184 (-)
XLOC_005236 aclyb coding upstream 67751 13973058 ~ 14078070 (-)
XLOC_005237 NA coding upstream 232979 14138286 ~ 14144159 (-)
XLOC_005238 avl9 coding upstream 260729 14166036 ~ 14211293 (-)
XLOC_005239 FO704673.1 coding upstream 640168 14545475 ~ 14551077 (-)
XLOC_005224 NA non-coding downstream 782447 13102866 ~ 13106223 (-)
XLOC_005222 BX572641.1 non-coding downstream 1553339 12335216 ~ 12335331 (-)
XLOC_005214 NA non-coding downstream 3115724 10769131 ~ 10772946 (-)
XLOC_005200 NA non-coding downstream 3758768 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 3825002 10060636 ~ 10063668 (-)
XLOC_005240 NA non-coding upstream 934480 14839787 ~ 14840559 (-)
XLOC_005243 NA non-coding upstream 1212580 15117887 ~ 15120113 (-)
XLOC_005244 NA non-coding upstream 1220102 15125409 ~ 15126049 (-)
XLOC_005246 NA non-coding upstream 1337260 15242567 ~ 15244000 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000161_01072131_01081719 NA coding CI01000161 null 1072094 ~ 1081836 (+)